Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39700 54 / 5e-09 Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 52 / 3e-08 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT5G66110 52 / 4e-08 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) AT1G29100 51 / 6e-08 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 51 / 8e-08 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 52 / 1e-07 Heavy metal transport/detoxification superfamily protein (.1) AT4G38580 50 / 1e-07 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT3G56891 50 / 2e-07 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 49 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1) AT1G56210 50 / 9e-07 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065600 [exp] 62 / 1e-11 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 57 / 5e-10 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 56 / 1e-09 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G003700 [exp] 56 / 2e-09 AT4G08570 207 / 5e-70 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 55 / 2e-09 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G175400 [exp] 54 / 5e-09 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.002G092200 [exp] 54 / 5e-09 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G135300 [exp] 53 / 1e-08 AT4G38580 234 / 3e-80 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.005G079800 [exp] 53 / 2e-08 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033469 [exp] 100 / 4e-24 AT5G27690 56 / 2e-09 Heavy metal transport/detoxification superfamily protein (.1) Lus10020906 [exp] 96 / 1e-22 AT5G27690 50 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 56 / 3e-09 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 55 / 3e-09 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 54 / 1e-08 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10039419 [exp] 53 / 2e-08 AT4G08570 215 / 5e-73 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 52 / 3e-08 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 52 / 3e-08 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10019789 [exp] 52 / 4e-08 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10014120 [exp] 52 / 4e-08 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.010G005300.2 pacid=42798991 polypeptide=Potri.010G005300.2.p locus=Potri.010G005300 ID=Potri.010G005300.2.v4.1 annot-version=v4.1 ATGTTTCCAGAGTTAGAGAAACCTCGAGTCACGGAGATACAAGTCCGAATGGACTGTAATGGGTGTGTGCAGAAGATCAAGAAGGCATTGCATGGCATCA ATGGTATATATGATCTCTACATTGACTTCCCACAGCAGAAGCTGACAGTCATTGGGTGGGCAGATCCCGAAAAAATTATCAAGGCGATTAGGAAAACTAG GAAAATTGCCACCATATGTTCCCATTCTGAACCATCAGATCCTGCTGCTCAGACAACAGAAAAACCACCCGAACAAGCACCTGAAGGTGGGGCACCGCCA CCACCGGTCTCCGACCAGGCAAATCCTCCCACAGCAGAAGCTCCACCTGCTGAAACAGCAGCTTCAACAGCAGAGCCTCCAAAAGATCCACCACAACCTG AGAACCCGCCACCACCTGGGGAGAATCCATCACCTGTTGCTGAAGAAACCAACGCAAATCAGCCACAAAGGCCCCCTGGACCCAAAGATTCAGGAGAGGT TCATGTTATATACCATCACCCACCTGACTATGGCTACAGATATGCTTATGGTCATAACTATGGCGGTAACTGGAACAGACACCCTATTAGCCAAGGAGTC CCACAAGCGGCGCCAAAGCCCATCTACGTGACTCACAGCTACAACACATACAGGCCATCACCGAATGTCACTGAATATGAATATCTCCGACCACCACCAC CACATCACACAATTTACAGTAGGATGGACCACTACAATGAGGATTATCATGACAACAGTCGCAGTAATAATGGAAACATTACATCTATGTTTAGCGATGA GAATCCAAATGCTTGCCGAATAATGTGA
AA sequence Show only first row Show all	>Potri.010G005300.2 pacid=42798991 polypeptide=Potri.010G005300.2.p locus=Potri.010G005300 ID=Potri.010G005300.2.v4.1 annot-version=v4.1 MFPELEKPRVTEIQVRMDCNGCVQKIKKALHGINGIYDLYIDFPQQKLTVIGWADPEKIIKAIRKTRKIATICSHSEPSDPAAQTTEKPPEQAPEGGAPP PPVSDQANPPTAEAPPAETAASTAEPPKDPPQPENPPPPGENPSPVAEETNANQPQRPPGPKDSGEVHVIYHHPPDYGYRYAYGHNYGGNWNRHPISQGV PQAAPKPIYVTHSYNTYRPSPNVTEYEYLRPPPPHHTIYSRMDHYNEDYHDNSRSNNGNITSMFSDENPNACRIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39700			Heavy metal transport/detoxifi...		Potri.010G005300 [exp]	0	1
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014300 [exp]	2.44	0.9219
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.007G006800 [exp]	4.00	0.9172	Pt-PSK3.1
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.011G142700 [exp]	5.47	0.9080
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	9.79	0.9174
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	10.48	0.8973
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	11.22	0.8793
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.014G006900 [exp]	12.84	0.8625	Pt-PSK3.2
AT2G01410			NHL domain-containing protein ...		Potri.006G111600 [exp]	13.00	0.8894
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.006G227600 [exp]	17.49	0.8819
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.002G168200 [exp]	17.97	0.8811

Compare expression of checked genes

Potri.010G005300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.