Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11240 650 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G73720 48 / 2e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G61210 47 / 6e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G50230 44 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15420 43 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173300 [exp] 52 / 8e-07 AT1G15420 164 / 2e-48 unknown protein Potri.003G060900 [exp] 51 / 1e-06 AT1G15420 163 / 5e-48 unknown protein Potri.007G107900 [exp] 47 / 3e-05 AT4G21130 505 / 2e-176 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G156900 [exp] 47 / 3e-05 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.001G384200 [exp] 43 / 0.0006 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 42 / 0.0008 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020907 [exp] 726 / 0 AT5G11240 650 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10033468 [exp] 699 / 0 AT5G11240 628 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10023255 [exp] 51 / 2e-06 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Lus10038425 [exp] 45 / 0.0001 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10008853 [exp] 45 / 0.0003 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10023381 [exp] 44 / 0.0003 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G005400.2 pacid=42799412 polypeptide=Potri.010G005400.2.p locus=Potri.010G005400 ID=Potri.010G005400.2.v4.1 annot-version=v4.1 ATGGTGTCCTTGAATATCAGAGACCTCTTGACAGCATTTAGTCCTTCATTGGACTACTTAGCAATCAGCTCGGGAGATGGTCGAATAAAGATCTGGGATA CATTAAAGGGCCAGGTGCAAACTGAGTTTGCAGACATAACATCAAGTGAAGGAGATTTTTATGCTAAACCTGAAAGAGGACACCTTTCGGTTGATTATAA ATGCATGAAGTGGTTGTCTTTGGATAAGAAGAAGAAAAGGAAGCTAGGAAGTTCATTGTTAGTGTTAGGAACGGGTAGTGGTGATGTTTTGGCACTTGAT GTGTCTGCTGGTCAGTTGAAGTGGAGTGTTAGCGATTGCCATCCTGGGGGTGTCAGTGCTGTTTCATTTTCTACACGTGATTCGTGCATTTACACTTCAG GTGCTGATGGAATGATTTGCAAAACTGATCCACAAACAGGAAATACTCTGGGGAAGTTTAGAGCTTCTACAAAGGCGATATCCTGCATGTCTGTTTCATC TGATGGGAAGATATTAGCAACAGCAGCTGCACAATTGAAGATTTTCAATTGCTCTGACCACAAAAAGATGCAGAAGTTCTCTGGTCATCCTGGAGCTGTT CGCTCCATGGTCTTTACTGATGATGGAAAATACATCCTCTCTTCTGCTGTTGGTGAAAGATATGTTGCACTGTGGAGAATAGATGGTGGCAAACGGCAAT CAGCAAGCTGTGTTCTTGCAATGGAGCACCCTGCTGTATTCATTGATTGCAAGTGCTTTGAAAATGAGGGAGTTGATGATGCAGGCCTGTATGTTTTGGC CATTTCAGAAACTGGTGTTTGTTACACGTGGTGTGGAAAAAATGTTGAGGAATTACGCAATTCCAAACCCACTAAAGTCTTACTATCTTATGAAGAATTT CCCAAAAATCACAAGGGTGCATTACCAACAGTACTGGCTGCAAAATTACAAGGCACTGCCAAACCTACAGCTGCAAATGTGTTTATTGCTTATGGTTTGC TTGTAAAGCCTTCATTTCAGAAAATATTAATGCATCCTGGGACAGACATTAAGCTAAATAGCTCTCAGGATGGAGTTCTGCTACCACTGAGTCAGTCTCT CAGCAACACTAAGAAAGCCAGAGACTTACAAAATCGAGTTACTGCATTAGACCGTGCCAATGTGGAAGATGCCTTGCTTCCTCTCCCAAAAGTTTATGAT CTTCATGAGAAGAAGATGAGAAATATGAATATCGTTGACCATGATGAGGTCATGGAAGAATCTGCTGAGAGCAAAGATGTCATGGTAGAGGTTGATGCTG TAACAACTAGCATGGAGAAGCAGTTGAGATTATTGAACATACTTGGTAGTAAAGATGATGGTATATTGAGCCCCACTCTTGATTCTGCAACACTTAAGGG TATTAACCTTGAAGACAATATCCCGCTAAAGAAGATGAGGGCAACAGTTTTGTCTATGGAACCTAGCAATGCATACAAGTTACTGGAAGTCTTGGTGGCT AAGTGGCAATCTAGGTCAAATAGTGGAAAGTGTGTTTTACCATGGATATACTGTATATTGGTCAATCATGGTCAATATATTGTGGCTCAAGAAAAACCGG AGTCCCAGATGCTTAATTCCTTATTAAAGATCACCAAATCAAGGGCTGTGGCTGTTCAACCTTTGTTGCAATTAGCAGGCCGTTTGCAGCTTGTAACAGC ACAGATTGACAAGGTTGCACTGAGCAAAAACCCTATCTCATTGCATAATGACCAAATGGATGATAACGAGGATGATGATGATGTCGACGAACATCTTTAT GGGGAAGAAGATGATGAATCCCAGTTAAGTAGTGATGATGACAGCTAG
AA sequence Show only first row Show all	>Potri.010G005400.2 pacid=42799412 polypeptide=Potri.010G005400.2.p locus=Potri.010G005400 ID=Potri.010G005400.2.v4.1 annot-version=v4.1 MVSLNIRDLLTAFSPSLDYLAISSGDGRIKIWDTLKGQVQTEFADITSSEGDFYAKPERGHLSVDYKCMKWLSLDKKKKRKLGSSLLVLGTGSGDVLALD VSAGQLKWSVSDCHPGGVSAVSFSTRDSCIYTSGADGMICKTDPQTGNTLGKFRASTKAISCMSVSSDGKILATAAAQLKIFNCSDHKKMQKFSGHPGAV RSMVFTDDGKYILSSAVGERYVALWRIDGGKRQSASCVLAMEHPAVFIDCKCFENEGVDDAGLYVLAISETGVCYTWCGKNVEELRNSKPTKVLLSYEEF PKNHKGALPTVLAAKLQGTAKPTAANVFIAYGLLVKPSFQKILMHPGTDIKLNSSQDGVLLPLSQSLSNTKKARDLQNRVTALDRANVEDALLPLPKVYD LHEKKMRNMNIVDHDEVMEESAESKDVMVEVDAVTTSMEKQLRLLNILGSKDDGILSPTLDSATLKGINLEDNIPLKKMRATVLSMEPSNAYKLLEVLVA KWQSRSNSGKCVLPWIYCILVNHGQYIVAQEKPESQMLNSLLKITKSRAVAVQPLLQLAGRLQLVTAQIDKVALSKNPISLHNDQMDDNEDDDDVDEHLY GEEDDESQLSSDDDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	0	1
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	1.41	0.8997
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	3.16	0.8541
AT1G79150			binding (.1)		Potri.005G096900 [exp]	3.87	0.8909
AT5G39900			Small GTP-binding protein (.1)		Potri.017G079800 [exp]	5.09	0.8218
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	5.65	0.8784
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	6.92	0.8168
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	7.93	0.8413
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	9.16	0.8528
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	11.53	0.8143
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	11.83	0.8407

Compare expression of checked genes

Potri.010G005400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.