Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16850 498 / 6e-175 Pectin lyase-like superfamily protein (.1) AT5G49215 488 / 4e-171 Pectin lyase-like superfamily protein (.1.2) AT3G06770 478 / 2e-167 Pectin lyase-like superfamily protein (.1.2.3) AT3G62110 419 / 7e-144 Pectin lyase-like superfamily protein (.1) AT4G23820 358 / 2e-120 Pectin lyase-like superfamily protein (.1) AT5G41870 351 / 2e-117 Pectin lyase-like superfamily protein (.1) AT3G48950 339 / 2e-112 Pectin lyase-like superfamily protein (.1) AT3G61490 331 / 4e-109 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 326 / 7e-107 Pectin lyase-like superfamily protein (.1) AT4G33440 308 / 3e-100 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211500 [exp] 702 / 0 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 413 / 2e-141 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 404 / 6e-138 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 352 / 3e-117 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 352 / 3e-117 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 343 / 2e-114 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 343 / 2e-114 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 340 / 2e-112 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 333 / 5e-110 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037714 [exp] 560 / 0 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 556 / 0 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 407 / 5e-139 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 351 / 2e-117 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 344 / 3e-114 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10003890 [exp] 342 / 1e-113 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 329 / 8e-109 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 327 / 2e-107 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 323 / 4e-106 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 323 / 6e-106 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.010G005500.1 pacid=42799977 polypeptide=Potri.010G005500.1.p locus=Potri.010G005500 ID=Potri.010G005500.1.v4.1 annot-version=v4.1 ATGCCAGTGGCATTACTCTTGCTACTGGCACTGAGCATTGCCATTAGAATTGATGCAGAAGAGAGTAGCGGAGTGTGTGACTTTAAGCCAGGTTTAAAAC CGAGGCCACATAGTGTGTCGATCTTGGAGTTTGGTGCAGTTGGAGATGGGAAAACATTGAATACTCTTGCTTTTCAGAATGCCATTTTCTATCTAAAGTC ATTTACTGACAAGGGCGGTGCTCAGCTTTATGTCCCACCCGGAAAATGGCTTACTGGAAGTTTCAGTCTTACCAGCCATCTCACACTCTTCCTGGAAAAA GGTGCTGTCATTCTAGGATCTCAGGATCCATCCCATTGGGATCTTGTTGATCCCTTACCCTCATATGGTCGTGGGATTGAACTTCCTGGAAAAAGATATC GAAGTTTAATAAATGGAGATATGCTAACTGATGTGGTAGTTACTGGTGATAATGGGACCATTGATGGTCAGGGTTCAGTTTGGTGGGATTGGTTCGAGTC CCATTCCTTGAACTACAGCCGCCCTCACCTTGTGGAATTTACATCATCTGATCTTGTAGTAGTTTCAAATCTTACCTTCTTGAATGCTCCTGCATATAAC ATTCATCCTGTATATTGCAGTAATGTGCTTGTTCAAAATATTTCAGTCTCTGCTCCTGGAGAATCCCCTTACACCATCGGCATAGTTCCAGATTCTTCCA ATAATGTGTGCATAGAGGACAGCCTCATCAAGGTTGGTTATGATGCGATTTCCCTCAAGAGTGGTTGGGATGAATATGGCATTGCCTATGATAGGCCAAC ACAAGATGTACACATAAGAAGGGTCTACCTTCAATCATCTTCAGGCTCGTCCATAGCCTTTGGTAGTGAGATGTCCGGTGGCATTTCTAATGTGTATGTT GAGCAGGTCTACCTATACAACTCATTTAGTGGCATTGAGTTTAGAACAACTAAGGGCAGAGGTGGTTATATCAAACGGATCATCATATCAAATGTTGAAT TGAAAAATATCAACATGGCGTTTGGTGCCATTGGTGATTGTGGGTCACATCCGGATGACAGTTTCGATCCTAATGCCATCCCAATTCTTGATCAAATCAC TTTGCAAAATGTGACTGGTTCAAACATCACTATGGCTGGCAACTTCACGGGACTTGCAGAATCTCCTTTCACCTCTATTTGTCTATTTAATGTCTCCTTA ACAATTCCCGCCACCTCAACTTCTTGGACATGTTCAAACGTTATTGGCTTTTCAGAGTTTGTTTCCCCGGAACCATGTCCTGAACTCAACAGCTCATATT CAAATTCTTCCTCGGTTTGCTATTCCATCCTGAAATCCTATGGTAAATCCGCAAACTTATGA
AA sequence Show only first row Show all	>Potri.010G005500.1 pacid=42799977 polypeptide=Potri.010G005500.1.p locus=Potri.010G005500 ID=Potri.010G005500.1.v4.1 annot-version=v4.1 MPVALLLLLALSIAIRIDAEESSGVCDFKPGLKPRPHSVSILEFGAVGDGKTLNTLAFQNAIFYLKSFTDKGGAQLYVPPGKWLTGSFSLTSHLTLFLEK GAVILGSQDPSHWDLVDPLPSYGRGIELPGKRYRSLINGDMLTDVVVTGDNGTIDGQGSVWWDWFESHSLNYSRPHLVEFTSSDLVVVSNLTFLNAPAYN IHPVYCSNVLVQNISVSAPGESPYTIGIVPDSSNNVCIEDSLIKVGYDAISLKSGWDEYGIAYDRPTQDVHIRRVYLQSSSGSSIAFGSEMSGGISNVYV EQVYLYNSFSGIEFRTTKGRGGYIKRIIISNVELKNINMAFGAIGDCGSHPDDSFDPNAIPILDQITLQNVTGSNITMAGNFTGLAESPFTSICLFNVSL TIPATSTSWTCSNVIGFSEFVSPEPCPELNSSYSNSSSVCYSILKSYGKSANL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16850			Pectin lyase-like superfamily ...		Potri.010G005500 [exp]	0	1
AT3G07210			unknown protein		Potri.002G245700 [exp]	6.48	0.8567
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	6.63	0.8737
AT1G70280			NHL domain-containing protein ...		Potri.010G094200 [exp]	11.61	0.8725
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.001G245300 [exp]	16.43	0.8854	SMO2.1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.006G131100 [exp]	17.94	0.8698
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Potri.005G144900 [exp]	18.43	0.8573
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.017G050300 [exp]	18.97	0.8481
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.007G140200 [exp]	19.62	0.8385
AT5G62865			unknown protein		Potri.012G078300 [exp]	22.24	0.8668
AT5G45780			Leucine-rich repeat protein ki...		Potri.011G068700 [exp]	23.49	0.8409

Compare expression of checked genes

Potri.010G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.