Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16810 727 / 0 APUM24 pumilio 24 (.1) AT2G29140 44 / 0.0004 APUM3 pumilio 3 (.1) AT2G29200 44 / 0.0005 APUM1 pumilio 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211400 [exp] 1112 / 0 AT3G16810 722 / 0.0 pumilio 24 (.1) Potri.010G225600 [exp] 67 / 3e-11 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G036500 [exp] 62 / 1e-09 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.003G009900 [exp] 49 / 1e-05 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.008G004300 [exp] 49 / 1e-05 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 46 / 8e-05 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.008G058300 [exp] 46 / 8e-05 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.010G201100 [exp] 45 / 0.0002 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.014G020300 [exp] 43 / 0.0005 AT5G56510 260 / 1e-79 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037712 [exp] 834 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10016836 [exp] 831 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10037976 [exp] 69 / 1e-11 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 62 / 2e-09 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10038706 [exp] 61 / 3e-09 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10034808 [exp] 60 / 8e-09 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10041139 [exp] 47 / 3e-05 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10036469 [exp] 47 / 5e-05 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10000516 [exp] 44 / 0.0004 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 43 / 0.0009 AT2G29200 1009 / 0.0 pumilio 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08144 [poplar] [flax] CPL CPL (NUC119) domain
Representative CDS sequence Show only first row Show all	>Potri.010G005600.1 pacid=42799818 polypeptide=Potri.010G005600.1.p locus=Potri.010G005600 ID=Potri.010G005600.1.v4.1 annot-version=v4.1 ATGGCGGCGAAGAAACAAGAGAGTAACAACCAATCAAAGAAGAGAAAGCAAAACCCAGATGCTAAGACAAATACATATAGCTCATTTTCTAAAAGACCGA AGCTTGTCAGCTCAAAACCTGAAAACAAGCAAGAAAAGAAGCCTTTCAAGCCATTTAAGAAGCAGAATTTTGGCAAATTGAAGTCGCAATCTGGTGAAGA GAAGAACACCCCTTTATCAAAAAGAGAGCGTAGGCTACATGCAAAGGAATTGACGGAGGCTAGGAAGAAGAGAAGGAAGCAACATTACACTCTTGAACAA GAGCTTGCACGTCTTTGGGAAAAGATGAGGCAGCGTAATATTGTCAAAGAAGAGAGATCCAAGATTATTGCTGAAGCTATACTAAAGATGAAGGGGAAGA TTCCGGAAATTGCAAGCTCCCATGTTTCGTCTCGTGTTCTGCAGACTTGTGTGAAGTATTGTACACAAGCTGAAAGGGATACCGTATTTGACGAGCTCAA GCCACATTTTCTGACCTTTGCGACCAACAAGTATGCAATTCATCTTGTGATGAAAATGCTAGATAATGCTTCTAAAAAACAGCTAGCAGAGTTCATCAGC TCCCTCCGTGGGCATGCTGCTTCTCTTCTTCGACACACTGTTGGATCTGTTGTTATCGAGCATGCATACCAGCTGGCAAATGCAACTCAAAAACAAGAGC TTCTGATGGAGTTGTATTCCACTGAACTTCAATTGTTCAAGGATCTTTCATCAATGAAAGAGAGCAGGTTACCGGATGTTATCCTGAAGCTGAACCTACA GAAAGGTTCAGTCTTACGACACATGGCTTCTGTCATTCAACCAATTCTGGAGAAAGGAATTGTTGATCACTCTATTATACACAGGGTGCTAATAGAGTAC CTCAGCATAGCTGGCAAGACCTCAGCAGCAGAAATAATTCAACAATTGTCAGGCCCACTTCTTGTTCGAATGATCCATACAAGGGATGGATCTCGGATTG GGATACTGTGTGTCAAACATGGGAGTGCTAAGGAGCGAAAGAAGATTGTCAAAGGACTGAAAGGCACAGTAGGCAAAACAGCTCATTTTCAATATGGAAG TTTGGTACTTGCCTGCATTGTCTCAACTATTGACGACACAAAGCTCGTAACAAAGACTGTCATTCGCGAGCTTCAGTCGATCTTAAAGGAGCTTGTTTTG GATAAGAATGGAAGACGTCCTTTGTTGCAGTTGCTTAATCCAAATTGTACGCGATATTTCAGTCCTGATGAAATGGCTTCTCTTAGCCTATCTATTTCCT CTCTCAATGCCATGGGTGAATTGGAAGTAAATTCTGAAACTAAGTCTTTAAAGGACGAGGAATCTAGTGACAAGGACAACTATGGGAGAGAAGTTACAAT GGCAAAGCCTGATGGAAGCACAAGTCCTGAAACTCTTCAACTCATTGAGGGTGGCAAAAAAGATCCTTCTATTAGAAGGCAAGAGCTGTTGGTGGGCAGT GGCCTTGCTGAGAGCCTCATTGACATATGTATCGAGAATGCAGAAGAGTTGCTAAGATCAAATTTTGGTAAAGAAGTCATATATGAGGTTGCAACTGGGG GTTCTGGTGGTATTCTTCAAGAAACTTTGGGTGACAAGATGAACACCTTGCATGAAGCTATAGCATCACTTGCAGCAGAATCTAAATTTGAGGAATCAGA TAAGGATCATGTCCTTGAAAATTTCCACTCCAGTCGGACCATTAGGAAATTAGTTATGGAAAGCTCCATGTTTGCCACCACTCTATGGAAGAAAGCTTTG AAAGGAAAGTGTGAGCAGTGGACACAAGGTCACAGTTCTAAGGTAATATGTGCATTCTTGGAATCGTCTGACGCCAAGATCAGTAAACTAGCCAAGGAAG AACTGCAGCCCTTAATAGACAGGGGTATTCTCAAATTACCTGAAAAGAAGCAACCAGCAAACAAATGA
AA sequence Show only first row Show all	>Potri.010G005600.1 pacid=42799818 polypeptide=Potri.010G005600.1.p locus=Potri.010G005600 ID=Potri.010G005600.1.v4.1 annot-version=v4.1 MAAKKQESNNQSKKRKQNPDAKTNTYSSFSKRPKLVSSKPENKQEKKPFKPFKKQNFGKLKSQSGEEKNTPLSKRERRLHAKELTEARKKRRKQHYTLEQ ELARLWEKMRQRNIVKEERSKIIAEAILKMKGKIPEIASSHVSSRVLQTCVKYCTQAERDTVFDELKPHFLTFATNKYAIHLVMKMLDNASKKQLAEFIS SLRGHAASLLRHTVGSVVIEHAYQLANATQKQELLMELYSTELQLFKDLSSMKESRLPDVILKLNLQKGSVLRHMASVIQPILEKGIVDHSIIHRVLIEY LSIAGKTSAAEIIQQLSGPLLVRMIHTRDGSRIGILCVKHGSAKERKKIVKGLKGTVGKTAHFQYGSLVLACIVSTIDDTKLVTKTVIRELQSILKELVL DKNGRRPLLQLLNPNCTRYFSPDEMASLSLSISSLNAMGELEVNSETKSLKDEESSDKDNYGREVTMAKPDGSTSPETLQLIEGGKKDPSIRRQELLVGS GLAESLIDICIENAEELLRSNFGKEVIYEVATGGSGGILQETLGDKMNTLHEAIASLAAESKFEESDKDHVLENFHSSRTIRKLVMESSMFATTLWKKAL KGKCEQWTQGHSSKVICAFLESSDAKISKLAKEELQPLIDRGILKLPEKKQPANK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	2.44	0.8824
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	2.82	0.8932
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	2.82	0.8817
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.007G068800 [exp]	3.87	0.8711
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	4.89	0.8679
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	6.48	0.8622
AT5G23300		PYRD	pyrimidine d (.1)		Potri.005G089700 [exp]	6.70	0.8405
AT5G14050			Transducin/WD40 repeat-like su...		Potri.005G218600 [exp]	6.78	0.8221
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.004G197200 [exp]	7.54	0.8309
AT4G25730			FtsJ-like methyltransferase fa...		Potri.009G118400 [exp]	7.93	0.8483

Compare expression of checked genes

Potri.010G005600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.