Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06778 154 / 9e-46 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 79 / 2e-16 Chaperone DnaJ-domain superfamily protein (.1) AT4G19590 77 / 4e-16 Chaperone DnaJ-domain superfamily protein (.1) AT5G53150 75 / 7e-15 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 71 / 1e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37750 69 / 1e-13 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 69 / 2e-13 Chaperone DnaJ-domain superfamily protein (.1) AT3G04980 68 / 9e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 67 / 2e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 66 / 6e-12 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211300 [exp] 404 / 1e-143 AT3G06778 170 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G221000 [exp] 78 / 4e-16 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 77 / 7e-16 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 76 / 2e-15 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 75 / 4e-15 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 75 / 5e-15 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 75 / 7e-15 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 74 / 8e-15 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 72 / 4e-14 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037711 [exp] 182 / 1e-56 AT3G06778 149 / 2e-44 Chaperone DnaJ-domain superfamily protein (.1) Lus10016835 [exp] 179 / 1e-55 AT3G06778 140 / 3e-41 Chaperone DnaJ-domain superfamily protein (.1) Lus10039019 [exp] 72 / 6e-14 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 72 / 7e-14 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 72 / 7e-14 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 71 / 7e-14 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10015891 [exp] 71 / 7e-14 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10028842 [exp] 71 / 9e-14 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 71 / 1e-13 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 70 / 3e-13 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.010G005700.2 pacid=42797968 polypeptide=Potri.010G005700.2.p locus=Potri.010G005700 ID=Potri.010G005700.2.v4.1 annot-version=v4.1 ATGGGACTAGAATTAGAAACCAAGAAATCCCAGTTAGTGTTTGAGATTTGTTCTCTGTCAGCCCTATTGGTTTCCTGTGTTCACAGGCATCATAGTAGCA GCTGTGATCCTGTAGAATCGCATTTTATTGATTGGTATCGCATTCTGGGAGTAGATGAAAATGCAGGCTTAGAAGTTATAAAGAAGAGGTATCATAAACT TGCTTTGCAACTTCACCCAGACAAGAACAACCATCCTAAAGCTGACGTTGCCTTCAAGCTTGTCTTGGAGGCTTATTCATATCTCTCAGATAATATAAAG AGAAGAGACTTCAACTTGGAGAGAAGCAAGAAATTCTGCATTGTGTGCAACAGAATTCCATATGCATTTTCCAACAATTTGAGCAAATCACATGCATCGA AAGTTGTCGAGGAATTGAAATCTGCAAATCGCACAAGATTGCTTCGAAATCGGGTAAAAGAAATGAAACAAAGATTCAAAGAGGAAATCAAGGTGATGGA GAACTGTTTGAGGGCTAATAGCTTGTCAAGGAAAGAAACACCTCTTTTCAAACCATCAGAGAATTACCAATTCCAAAGCAACACTCGTTGTGTGTCACAG AAGGCCGAGTCCCCGGTTTTTGATCCATCAAACTATCTTTTCACAGGCTATCCTCACATTAGGAATCCGATTTACAAGAAACCCGAGAACTTTTCAGACT TGAAGAGGGGAGACATACTGAACAAGTACGGTGGCCATGGAGAAGGAAGATCATATAATGATTTCCCAGTTTTTGAGATGAGATCAGATGGAGGAATGCT CAAGGAATCTGCTGCTTGTGTTTATTCATAA
AA sequence Show only first row Show all	>Potri.010G005700.2 pacid=42797968 polypeptide=Potri.010G005700.2.p locus=Potri.010G005700 ID=Potri.010G005700.2.v4.1 annot-version=v4.1 MGLELETKKSQLVFEICSLSALLVSCVHRHHSSSCDPVESHFIDWYRILGVDENAGLEVIKKRYHKLALQLHPDKNNHPKADVAFKLVLEAYSYLSDNIK RRDFNLERSKKFCIVCNRIPYAFSNNLSKSHASKVVEELKSANRTRLLRNRVKEMKQRFKEEIKVMENCLRANSLSRKETPLFKPSENYQFQSNTRCVSQ KAESPVFDPSNYLFTGYPHIRNPIYKKPENFSDLKRGDILNKYGGHGEGRSYNDFPVFEMRSDGGMLKESAACVYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06778			Chaperone DnaJ-domain superfam...		Potri.010G005700 [exp]	0	1
AT4G34150			Calcium-dependent lipid-bindin...		Potri.002G123200 [exp]	21.63	0.6443
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.008G152100 [exp]	31.30	0.6371
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	61.22	0.5965
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	67.88	0.5959
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.002G052700 [exp]	87.32	0.5799
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.002G248400 [exp]	94.48	0.5785	ATCSLC06.4
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.005G179300 [exp]	95.47	0.5676	ALDH3.3
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	109.86	0.5480
AT2G17080			Arabidopsis protein of unknown...		Potri.004G182700 [exp]	111.12	0.5515
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	116.48	0.5572	Pt-CESA1.2

Compare expression of checked genes

Potri.010G005700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.