Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 369 / 7e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 352 / 2e-118 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78830 339 / 8e-113 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 332 / 5e-110 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT5G35370 99 / 7e-22 S-locus lectin protein kinase family protein (.1) AT4G32300 97 / 3e-21 SD2-5 S-domain-2 5 (.1) AT3G12000 95 / 4e-21 S-locus related protein SLR1, putative (S1) (.1) AT4G00340 89 / 9e-19 RLK4 receptor-like protein kinase 4 (.1) AT4G21390 85 / 2e-17 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110200 [exp] 539 / 0 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110500 [exp] 525 / 0 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 513 / 0 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 512 / 0 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 509 / 2e-180 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G066200 [exp] 423 / 7e-146 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G391200 [exp] 340 / 3e-115 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 136 / 2e-34 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.006G091400 [exp] 110 / 1e-25 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022495 [exp] 438 / 6e-152 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10000579 [exp] 432 / 1e-149 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 110 / 2e-25 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 108 / 7e-25 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10002917 [exp] 103 / 2e-23 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10014371 [exp] 97 / 1e-21 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10000249 [exp] 96 / 1e-20 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10023868 [exp] 94 / 3e-20 AT5G03700 458 / 3e-158 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10039315 [exp] 94 / 3e-20 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10004283 [exp] 92 / 1e-19 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G005900.1 pacid=42798561 polypeptide=Potri.010G005900.1.p locus=Potri.010G005900 ID=Potri.010G005900.1.v4.1 annot-version=v4.1 ATGTCCTCTCCTCTTCTTGAAGTCTCCTTGCTTTCCCTCTGCCTCCTCTACGGCTCAATCTTTTCCTTGATTGCTCAAGCTTCTGTCCCTCCGTCTGCCA GATTTCAGATCCCCGTCGACACATTTTTCGGGGTGTACTCGGTAGAATATGGGGCAAATTATCGTCTCATAGGCATTGATAACTACCCTTTCCAACTTGG CTTTTACAACACCACCCCTGATGCCTTCACTCTCGCTCTCCGCATGGGAAACCCTCTCGCATCTCCAAAGATGTATTTTGTTTGGGAAGCCAACCGAGGC AAACCAGTACGTGTAAATGCCACTCTCACTCTTGGTGACGATGGAAACCTTGTCTTGGCTGATGTCGATGGAAGCATTGCCTGGCAAACCTACACTGCCC AGAAAGGAGTTGTTGGCTTTCAACTCCTTCCCAATGGCAACATGGTGCTTCATGATTCGAAGGGCAATTTTGTTTGGCAAAGTTTTGACCATCCCACCGA TACTCTTCTAGTGGGGCAGTCTCTTCGTGTTGAAGGAACAGCTAGGCTTGTGAGTCGGGCATCTGAAAAGGAAAACTCCGATGGACCATATAGCTTGGTT TTGGAACACAAAAGACTAGCCATGTACTACAAGAGCCCTAGCTCTCCTAGGCCTTATCTTTACTACACTCCAGACAAGCTAAGCGAATCCAAGGGTCGTA TTCACAATGTAACTCTGTATAGCCGAGGAGAAGTCGATGGATTTTATTATGATTTTGCTCTTTCAACTCCTTTCCAAGATGCCATACTCACTACAGTCAA CTACAATAACACACTGTCGTTTCTTCGACTCGGGATAGATGGGAATCTTAGGATCCACACCTTCTATGATAAAGCGAACAGCAATGATGGATTTCAAGTG ACCTTCACCCTTTTCTCTAGAGATTCGGGCTGGGAGAGTGAGTGTCAATTGCCAGAGAGATGCGGTCGCTTTGGACTTTGTGAGGATAACCAATGTGTCG CTTGCCCGTTGCCGAATGGACTAATGGGTTGGAGCAGGGACTGTCAACCTGTGAAGTCGTCTTCATGTGGATCCCAGAAATTCTACTACTACAAGTTGGA AGGGGTTGATCATTACATGAGTAAGCACACAAGTGGGATTGGTCCGATGAATGAGGACGATTGTCGGAGGAAATGTTCAGGCGATTGCAAGTGCTTGGGT TACTTTTACAACAAGGATACATCCAAGTGTTGGATTGCTTATGATCTCCATACCCTAACCAGGGTTGGAAACTCCACTCACTTAGGCTACATAAAGGCAC CGAAATAA
AA sequence Show only first row Show all	>Potri.010G005900.1 pacid=42798561 polypeptide=Potri.010G005900.1.p locus=Potri.010G005900 ID=Potri.010G005900.1.v4.1 annot-version=v4.1 MSSPLLEVSLLSLCLLYGSIFSLIAQASVPPSARFQIPVDTFFGVYSVEYGANYRLIGIDNYPFQLGFYNTTPDAFTLALRMGNPLASPKMYFVWEANRG KPVRVNATLTLGDDGNLVLADVDGSIAWQTYTAQKGVVGFQLLPNGNMVLHDSKGNFVWQSFDHPTDTLLVGQSLRVEGTARLVSRASEKENSDGPYSLV LEHKRLAMYYKSPSSPRPYLYYTPDKLSESKGRIHNVTLYSRGEVDGFYYDFALSTPFQDAILTTVNYNNTLSFLRLGIDGNLRIHTFYDKANSNDGFQV TFTLFSRDSGWESECQLPERCGRFGLCEDNQCVACPLPNGLMGWSRDCQPVKSSSCGSQKFYYYKLEGVDHYMSKHTSGIGPMNEDDCRRKCSGDCKCLG YFYNKDTSKCWIAYDLHTLTRVGNSTHLGYIKAPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78850			D-mannose binding lectin prote...		Potri.010G005900 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.015G127000 [exp]	11.13	0.5296
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Potri.001G094700 [exp]	14.07	0.6685
AT4G28600		NPGR2	no pollen germination related ...		Potri.008G169500 [exp]	19.05	0.5603	NPGR2.2
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	22.53	0.6045
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Potri.015G093000 [exp]	109.21	0.4325
					Potri.001G388001 [exp]	109.22	0.5132
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	112.29	0.4897	TIP4.1
AT4G36470			S-adenosyl-L-methionine-depend...		Potri.007G021400 [exp]	113.46	0.4769
AT1G10020			Protein of unknown function (D...		Potri.009G084000 [exp]	138.51	0.4677
AT3G20530			Protein kinase superfamily pro...		Potri.001G421400 [exp]	193.41	0.4153

Compare expression of checked genes

Potri.010G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.