Plant FIBer expression Database

Potri.010G006000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16060 380 / 3e-133 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016832
[exp]
415 / 7e-147 AT4G16060 386 / 7e-136 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G006000.1 pacid=42798110 polypeptide=Potri.010G006000.1.p locus=Potri.010G006000 ID=Potri.010G006000.1.v4.1 annot-version=v4.1
ATGATCACTTCTCCCCCCCTTCCATTCATTCACTTTCCTTGCTCACGTGCTTCTCACGTGAAAACAATTCTCTCTCCAATCTCCTCCTCAACCTCGCCTC
TCACAAACAACCTCGCCGCACTCCCCTCTCTCAGACTCCCTCGCTATTCCGGCAGCCGGATTCCTCCCCGGCGACTGTCTCTGATCATGTCCTCTGCTAT
CTCCCGACCGGAACCGATCGAACTCAGAGACGATTCTGATTTCCGCAGTTTTCTCTCTTCGTCGGACTCCGATCTCATCTCCGTCTGCGGCTTCGGCTCT
CTCCTCTCTGAGAGAAGTGCTAGAAGTACATTTCCAGATCTACTCAACTTTAGAGTTGCAAGACTGAATGGATTTAGACGCGTCTTTGCTCACGTAGCTC
CTATTTTCTTTGAGCGTGGTATCGCCAAGCCTGAAACCAAGGAGATTTCGAGCTTGAGTGTGGAGCCGTGTGAAGGTGAAGGTCTAGTAGTTACAGTTTT
TGAGATTGAAAAATCAGAGATTCCAGCTTTTATGGAGAGGGAGCTCGAGTTTCGATTTCTAGCTGTTGTGCCCGAAACACTGGATGGCAAGCCGTTTGAT
TTTCCTGCGGTGCTTTGTGCGCGTTATAGTGATGAAGAGTTTTTCCAAGTTAGATGCAAAGGAAGTAAGGAGATTTATTTTCAGCATTATGGAAGATATA
ACATCAATAAGATCTGGAGAGATGATATCTTACCTTGTCGTGCTTATCTTCGTCACTGTGTGTTGGCAGCGAAGAATCTCAGCGATGCAGCTCACAGCAA
TTTTTTGGAACACACTTTCCTTGGAGACCGCAAAACAACCATTCGTGAGTACCTAGCTACAACAGGAGCAGGCATAATGGAAGAAGAGCCCCCAGAGTCC
CTCAAGACACGTTACGGTGGCTAA
AA sequence
>Potri.010G006000.1 pacid=42798110 polypeptide=Potri.010G006000.1.p locus=Potri.010G006000 ID=Potri.010G006000.1.v4.1 annot-version=v4.1
MITSPPLPFIHFPCSRASHVKTILSPISSSTSPLTNNLAALPSLRLPRYSGSRIPPRRLSLIMSSAISRPEPIELRDDSDFRSFLSSSDSDLISVCGFGS
LLSERSARSTFPDLLNFRVARLNGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGEGLVVTVFEIEKSEIPAFMERELEFRFLAVVPETLDGKPFD
FPAVLCARYSDEEFFQVRCKGSKEIYFQHYGRYNINKIWRDDILPCRAYLRHCVLAAKNLSDAAHSNFLEHTFLGDRKTTIREYLATTGAGIMEEEPPES
LKTRYGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16060 unknown protein Potri.010G006000
[exp]
0 1
Potri.016G007450
[exp]
1.73 0.8183
AT5G37360 unknown protein Potri.013G050300
[exp]
5.65 0.8262
AT5G63980 SUPO1, RON1, AL... suppressors of PIN1 overexpres... Potri.007G105100
[exp]
5.91 0.7859
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.017G030700
[exp]
7.07 0.7630
AT4G31805 WRKY family transcription fact... Potri.006G263800
[exp]
11.13 0.7225
AT1G78590 NADK3, ATNADK-3 ARABIDOPSIS THALIANA NADH KINA... Potri.011G104400
[exp]
12.96 0.7836
AT3G52170 DNA binding (.1.2) Potri.008G029500
[exp]
15.23 0.7703
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Potri.011G164100
[exp]
18.89 0.7809
AT1G80600 WIN1 HOPW1-1-interacting 1 (.1) Potri.017G053500
[exp]
20.49 0.7178
Potri.019G108050
[exp]
22.97 0.7543

Potri.010G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.