Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05640 452 / 1e-159 Protein phosphatase 2C family protein (.1.2) AT5G27930 448 / 6e-158 Protein phosphatase 2C family protein (.1.2) AT3G16800 429 / 9e-151 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 311 / 2e-102 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 306 / 3e-101 Protein phosphatase 2C family protein (.1) AT1G79630 303 / 4e-99 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 300 / 3e-98 Protein phosphatase 2C family protein (.1) AT4G03415 282 / 2e-91 Protein phosphatase 2C family protein (.1.2) AT1G03590 281 / 3e-91 Protein phosphatase 2C family protein (.1) AT5G01700 275 / 3e-90 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G006200 [exp] 637 / 0 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 496 / 1e-176 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G012200 [exp] 492 / 4e-175 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 335 / 1e-111 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 322 / 1e-106 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G085500 [exp] 318 / 3e-105 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 314 / 2e-103 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 298 / 2e-97 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 296 / 9e-97 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037709 [exp] 488 / 5e-173 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 485 / 4e-172 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10029874 [exp] 462 / 2e-163 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 420 / 6e-147 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 419 / 4e-146 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10027122 [exp] 316 / 5e-104 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 310 / 8e-103 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10000402 [exp] 312 / 1e-102 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10021486 [exp] 301 / 5e-99 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 315 / 1e-97 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.010G006100.3 pacid=42797637 polypeptide=Potri.010G006100.3.p locus=Potri.010G006100 ID=Potri.010G006100.3.v4.1 annot-version=v4.1 ATGGTGCTTTTTCCATCTTTTCATGATGGATTGTCCAGAATAATATCGACAATCAAGGGCAGAAACTCTCAAAAAGATACTGGAAAGGAAGCTGCAGAAG CTTTGGCAAAGGATGCGAGGAAGAACGAGTTGATGTTGAGCTCCTCTGGCAATGTTAAGTCTAGTAAGTCAGATAATTTTGCATCGGTCTGCTCCAAGAG AGGGCAAAAAGGAATTAATCAGGATTCTTCTGTTGTGTGGGAGGGATTCGGGAGTCAAGATGATATGATCTTCTGTGGCATTTTTGATGGGCATGGACCA TGGGGCCATTTCGTTTCAAAAAAAGTTAGAGAATCTGTACCCTCTTTGTTGCTGTGTAACTGGCAAGAAAACCTTGCATTGACATCGCTTGGCATGGACT TCGAGATGGATTTGGATAGAAACCTTCACCAATTCGATATTTGGAAGCAGTCCTACCTAAAGACTTACGCTGCCATTGATCAGGAACTTAAGCAGAATCG CAAGATTGACTCCTTTTTTAGTGGGACTACGGCCGTAACAATCATTAAACAGGGTGAGAATCTTGTTATAGCAAATGTTGGTGATTCTCGGGCTGTGCTG GCGACCACTTCCATTGATGGCAGTCTGGTTCCACTTCAGCTTACCATCGATTTTAAGCCTAATTTACCTGAGGAGGCTGAAAGAATAACACAGTCGAAGG GCCGAGTGTTTTGCCTGCATGACGAGCCAGGGGTTTATAGGGTCTGGATGCCAAACGGCAAGACTCCAGGACTATCATTATCAAGAGCCTTTGGAGACCA CTGCGTAAAAGATTTCGGGCTCGTTTCGGAACCGGATGTGACACGAAGAAACATATCAAGCAGAGATCAGTTCGTCATCTTGGCGACTGACGGGGTATGG GATGTGATTTCCAACCAAGAAGCAGTGCAGGTTGTTTCTTTGACACCAGATAGGGAAGAATCAGCTAAAAGACTGGTGGAATGCGCAGGCCGTGCATGGA GGTACAAGAAAAAAGGGATTGCCATGGATGATATCTCAGCCATATGTCTCTTCTTCCACCCTTCACCGTCTCAACAGATCGACCCTCAACTGATCTCCTC ACAGGCTGACATGATGAAAGCTTTGTAA
AA sequence Show only first row Show all	>Potri.010G006100.3 pacid=42797637 polypeptide=Potri.010G006100.3.p locus=Potri.010G006100 ID=Potri.010G006100.3.v4.1 annot-version=v4.1 MVLFPSFHDGLSRIISTIKGRNSQKDTGKEAAEALAKDARKNELMLSSSGNVKSSKSDNFASVCSKRGQKGINQDSSVVWEGFGSQDDMIFCGIFDGHGP WGHFVSKKVRESVPSLLLCNWQENLALTSLGMDFEMDLDRNLHQFDIWKQSYLKTYAAIDQELKQNRKIDSFFSGTTAVTIIKQGENLVIANVGDSRAVL ATTSIDGSLVPLQLTIDFKPNLPEEAERITQSKGRVFCLHDEPGVYRVWMPNGKTPGLSLSRAFGDHCVKDFGLVSEPDVTRRNISSRDQFVILATDGVW DVISNQEAVQVVSLTPDREESAKRLVECAGRAWRYKKKGIAMDDISAICLFFHPSPSQQIDPQLISSQADMMKAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006100 [exp]	0	1
AT2G35035		URED	urease accessory protein D (.1...		Potri.001G159600 [exp]	3.87	0.8263
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043900 [exp]	5.91	0.7857
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	5.91	0.7985
AT3G14470			NB-ARC domain-containing disea...		Potri.003G025904 [exp]	17.43	0.8138
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.012G129000 [exp]	17.97	0.7540
AT5G61910			DCD (Development and Cell Deat...		Potri.015G106400 [exp]	18.54	0.7677	Pt-BON1.2
AT2G38430			unknown protein		Potri.019G029800 [exp]	20.92	0.7145
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.004G035300 [exp]	22.84	0.7531
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108701 [exp]	33.40	0.7080
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.016G072300 [exp]	40.39	0.7053	E2Fa2-1,E2F3.2

Compare expression of checked genes

Potri.010G006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.