Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16785 1607 / 0 PLDZ1, PLDZETA1, PLDP1 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) AT3G05630 1306 / 0 PLDP2, PDLZ2, PLDZETA2 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) AT5G25370 107 / 2e-23 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G35790 103 / 3e-22 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G52570 100 / 5e-21 PLDALPHA2 phospholipase D alpha 2 (.1) AT4G00240 99 / 1e-20 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 98 / 2e-20 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11830 97 / 3e-20 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT1G55180 97 / 3e-20 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1) AT4G11840 97 / 5e-20 PLDGAMMA3 phospholipase D gamma 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211100 [exp] 2006 / 0 AT3G16785 1622 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.013G012300 [exp] 1495 / 0 AT3G16785 1437 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.003G037700 [exp] 107 / 2e-23 AT1G55180 1031 / 0.0 phospholipase D alpha 4 (.1) Potri.005G105600 [exp] 104 / 2e-22 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 103 / 3e-22 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 103 / 4e-22 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 102 / 1e-21 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 100 / 4e-21 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.006G253900 [exp] 99 / 1e-20 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016830 [exp] 1709 / 0 AT3G16785 1586 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10020672 [exp] 1414 / 0 AT3G05630 1393 / 0.0 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) Lus10029873 [exp] 1224 / 0 AT3G16785 1199 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10037708 [exp] 987 / 0 AT3G16785 885 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10041855 [exp] 104 / 2e-22 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 102 / 4e-22 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10036361 [exp] 102 / 5e-22 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10012699 [exp] 100 / 6e-21 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041787 [exp] 98 / 2e-20 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10042282 [exp] 97 / 2e-20 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PLD PF13091 [poplar] [flax] PLDc_2 PLD-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G006300.1 pacid=42799658 polypeptide=Potri.010G006300.1.p locus=Potri.010G006300 ID=Potri.010G006300.1.v4.1 annot-version=v4.1 ATGGCATCATCAGAGCAATTAATGGGAGGTGGAAGTGTCGGAGGTGGTGGTGGTGGTGGTGGTGGTCCCCGATACGTAAAAATGCAATCAGAGCCATCAA CGCCGTTACAACCACAATCATCATCAATAATATCGTCCTTCTTCTCTTTCCGTCAAGGTTCGACACCGGAATCCTGTCGGATTTTCGATGAATTACCGAA AGGCACTATCGTCTCCGTATCTAGACCCGACCTCAGCGATATTAGTCCTGTTCAATTATCTTACACTATCGAAGTTCAATACAAACAGTTCAAGTGGACA CTGTTGAAGAAAGCGGCTCAAGTGTTTTATTTACATTTTGCATTGAAGAAACGATTGTTTTTCGAGGAAATTCAGGAGAAGCAAGAGCAGGTTAAAGATT GGCTTCAAAATCTAGGAATAGGAGAACATACGCCCATGGTGCAAGATGATGATGATGCTGATGATGAGACCGTTCCTTTGCATCATGATGAAATTGCCAA AAACAGGGATGTTCCATCAAGTGCTGCTTTACCAGTTATTCGTCCAGCATTGGGAAAGCAGCATTCGATGTCGGACGATGCAAAGGTTGCAATGCAACAA TATTTAAATCACTTTTTAGGGAACATGGATATTGTTAACTCCAGAGAGGTTTGCAAGTTTTTGGAGGTCTCGAAATTGTCCTTTTTACCAGAATATGGCC CTAAGCTGAAAGAAGAATATGTTATGGTGAAGCATCTACCACAAATAGTGAAGAATGATGATTCCAGGAAATGTGCTTGCTGTTGCTTTAGTTGCTGTAA TGACAACTGGCAGAAGGTGTGGGCTGTTTTGAAACCAGGATTCTTGGCACTTCTGGCTGATCCTTTTGCTACCAAACCTTTGGATATAATTGTTTTTGAT GTATTACCTACTTCAGATGGAAGTGGTGAAGGCCGAGTGTCATTAGCAGCAGAAATAAAGGAGAGGAATCCCTTACGGCACAGTTTTAAGGTCACATGTG GAAACAGAAGCATAGACTTGAGATCTAAAAGTGGTGCCAGAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTTAGGCCTCCTGAGGGTTGGTG TCATCCTCATCGCTTTGGCTCTTTTGCTCCTCCTAGGGGTTTGTCTGACGATGGTAGTCAGGCTCAGTGGTTTATAGATGGTAGGGCAGCTTTTGATGCT ATTGCTTCATCAATTGAGGATGCTAAATCTGAGATATTTATTTGTGGGTGGTGGCTGTGCCCAGAACTTTATCTAAGGCGTCCTTTTCGTGATCATGCCT CTTCTAGACTTGATTCTTTGCTGGAAATTAAAGCTAAACAAGGGATTCAGATATATATTCTTCTCTATAAAGAGGTGGCTCTTGCTCTGAAAATAAATAG TGTGTATAGCAAGAGAAAGCTTCTTAGTATTCATGAGAATGTGAGGGTACTGCGGTCTCCTGACCACTTTTCAACAGGTGTTTACCTTTGGTCCCACCAT GAAAAGCTTGTCATCGTGGATCACCAGGTTTGCTTTATTGGAGGACTGGACCTGTGCTTTGGCCGTTATGACACATGTGAACACAGAGTGGGAGACTGCC CTCCTCAAGAATGGCCAGGAAAGGATTATTATAACCCAAGGGAATCTGAACCAAATTCATGGGAAGATATGATGAAAGATGAACTGGATCGTGGCAAATA TCCTCGAATGCCTTGGCATGATGTCCATTGTGCTCTTTGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTCCAGCGTTGGAACTTTGCCAAGAGA AATAAAGCTCCATATGAGGAAGCAATTCCTCTACTTATGCCCCAGCAGCACATGGTTATCCCACACTATAGGGGGCAAAACAAAGAGAAGGAAGTTGAAA GAAGAGATATTGAAGATAATGTAAAAGGCATTAAAAGGCAGGATTCGTTTTCCTCTGGTTCATCTTTACAAGACATCCCTCTTCTTTTGCCTCAGGAAGC TGATGGGCCTGATGGCTCTGGTGTAGGCCCAAAACGAAATGGGCTGGAGTCTACCCCTGGAAGAAGCCACCCACATGCTTTCCGGAAATCCAAAATTGAA TCAGTTGTTCCAGACATGCCAATGACAAGCTTTGTAGATGATCACGATTCCTTGAATCTTCATGTGAAAATGTCTCCAGATTTAGCAGCGGAGCCTGGCA CCAAAACTTCTGACTTGGAATGGTGGGAATCACAAGAAAGGGTTGATCAGATTGGTTCTGTGGATGAAAGTGGGCAAGTTGGTTCTCGTGTTTCTTGTCA TTGTCAGGTCATAAGGAGTGTGAGTCAGTGGTCTGCTGGAACAAGCCAAATTGAAGAGAGCATTCACTGTGCTTATTGTTCTCTTATCGAGAAAGCGGAG AACTTTGTCTACATCGAGAATCAATTTTTCATATCAGGTCTTTCAGGAGATGATATTATACAGAATCGTGTGTTAGAAGCATTGTATCAGCGTATTATGC GAGCATTTAACGATAAGAAGTGTTTCAGGGTTATTATTGTCATACCACTGCTTCCAGGATTCCAGGGTGGTGTAGATGATGGTGGTGCAGCATCTGTCAG AGCCATAATGCATTGGCAATATCGAACTATTTGCAGAGGACAAAATTCAGTATTGCACAACTTATATGATCTTCTTGGTCCGAAAACTCAAGATTACATT TCTTTCTATGGCCTTAGAGCTTATGGCCAACTTTTTAATGGTGGTCCTGTGGTCACCAGTCAGGTGTATGTCCATAGTAAAATAATGATAGTTGATGACC GTGCAACCTTGATTGGATCAGCTAATATTAATGACAGGAGTTTGCTTGGGTCACGAGATTCTGAGATTGGGGTACTTATCGAAGACAAGGAATTTGTGGA TTCATTAATGGGAGGGAAGCCCTGGAAGGCTGGAAAATTTGCTCTTAGTCTCCGCCTTTCATTGTGGTCTGAACACCTTGGTCTTCATGCCAAAGAGATC CATAAAGTGATTGACCCAGTAATTGAGTCGACTTACAAAGACAGATGGATGTCAACTGCAAAGACAAATACCATGATCTATCAGGATGTCTTTTCTTGTG TGCCAAGTGATCTTATACACACCAGAGCCGCACTCAGACAAAGTACGGCGTTCTGGAAGGATAGGCTTGGCCATACCACCATCGATCTAGGGATAGCCCC TCAAAAGCTTGAGTCTTACCAAAATGGAGACATAAAAAACACCGATCCGCTGGAGAGATTAAAGTCGGTGCGGGGGCATCTTGTTTCTTTCCCTCTGGAC TTCATGTGCAAGGAAGACTTGAGACCTGTGTTCAATGAGAGCGAGTATTATGCATCCCAAGTTTTTTATTAG
AA sequence Show only first row Show all	>Potri.010G006300.1 pacid=42799658 polypeptide=Potri.010G006300.1.p locus=Potri.010G006300 ID=Potri.010G006300.1.v4.1 annot-version=v4.1 MASSEQLMGGGSVGGGGGGGGGPRYVKMQSEPSTPLQPQSSSIISSFFSFRQGSTPESCRIFDELPKGTIVSVSRPDLSDISPVQLSYTIEVQYKQFKWT LLKKAAQVFYLHFALKKRLFFEEIQEKQEQVKDWLQNLGIGEHTPMVQDDDDADDETVPLHHDEIAKNRDVPSSAALPVIRPALGKQHSMSDDAKVAMQQ YLNHFLGNMDIVNSREVCKFLEVSKLSFLPEYGPKLKEEYVMVKHLPQIVKNDDSRKCACCCFSCCNDNWQKVWAVLKPGFLALLADPFATKPLDIIVFD VLPTSDGSGEGRVSLAAEIKERNPLRHSFKVTCGNRSIDLRSKSGARVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLSDDGSQAQWFIDGRAAFDA IASSIEDAKSEIFICGWWLCPELYLRRPFRDHASSRLDSLLEIKAKQGIQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRSPDHFSTGVYLWSHH EKLVIVDHQVCFIGGLDLCFGRYDTCEHRVGDCPPQEWPGKDYYNPRESEPNSWEDMMKDELDRGKYPRMPWHDVHCALWGPPCRDVARHFVQRWNFAKR NKAPYEEAIPLLMPQQHMVIPHYRGQNKEKEVERRDIEDNVKGIKRQDSFSSGSSLQDIPLLLPQEADGPDGSGVGPKRNGLESTPGRSHPHAFRKSKIE SVVPDMPMTSFVDDHDSLNLHVKMSPDLAAEPGTKTSDLEWWESQERVDQIGSVDESGQVGSRVSCHCQVIRSVSQWSAGTSQIEESIHCAYCSLIEKAE NFVYIENQFFISGLSGDDIIQNRVLEALYQRIMRAFNDKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSVLHNLYDLLGPKTQDYI SFYGLRAYGQLFNGGPVVTSQVYVHSKIMIVDDRATLIGSANINDRSLLGSRDSEIGVLIEDKEFVDSLMGGKPWKAGKFALSLRLSLWSEHLGLHAKEI HKVIDPVIESTYKDRWMSTAKTNTMIYQDVFSCVPSDLIHTRAALRQSTAFWKDRLGHTTIDLGIAPQKLESYQNGDIKNTDPLERLKSVRGHLVSFPLD FMCKEDLRPVFNESEYYASQVFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	0	1
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.006G083600 [exp]	2.23	0.7725
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	2.44	0.7776
AT1G77680			Ribonuclease II/R family prote...		Potri.002G086400 [exp]	6.40	0.7860
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.005G260100 [exp]	9.16	0.7722
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	9.89	0.7466
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.006G270600 [exp]	11.74	0.7322
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.002G047700 [exp]	13.85	0.7181
AT3G58560			DNAse I-like superfamily prote...		Potri.016G061700 [exp]	17.23	0.7277
AT4G30100			P-loop containing nucleoside t...		Potri.002G093500 [exp]	17.77	0.7768
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	18.97	0.7534

Compare expression of checked genes

Potri.010G006300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.