Plant FIBer expression Database

Potri.010G006700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G006700.2 pacid=42799117 polypeptide=Potri.010G006702.1.p locus=Potri.010G006700 ID=Potri.010G006700.2.v4.1 annot-version=v4.1
ATGAATAGTAAGTTCGACCAGGTTAAGAATAATAACAGTCATCCACCCGTTAAGGACAGCAGCCATGCCACTGTCTTCACACAGCAGGATTTCAGGAATC
ACAATGCTTATCTTTACCAAAAGGACACTTACCATGACCTTGCTCCAACGGTAATGCTCTGCAATCAAGATGGAAACTCAGCAGAAGAGGAAGCTACAAC
CATGCAATCTGCAACGGTAATGTCCTGCAATCAAGATGGAAACCTTGCTCCAACGGTAATGCTCTGCAATCAAAATGGAAACTTAGCAGAAGAGGGAGCT
ACAACCATGCAATCTGCAATGGTAGTCTTCTGCAATCAAGATGGAAACTCATGCAATCTGCAACGGTAA
AA sequence
>Potri.010G006700.2 pacid=42799117 polypeptide=Potri.010G006702.1.p locus=Potri.010G006700 ID=Potri.010G006700.2.v4.1 annot-version=v4.1
MNSKFDQVKNNNSHPPVKDSSHATVFTQQDFRNHNAYLYQKDTYHDLAPTVMLCNQDGNSAEEEATTMQSATVMSCNQDGNLAPTVMLCNQNGNLAEEGA
TTMQSAMVVFCNQDGNSCNLQR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G006700
[exp]
0 1
AT1G78860 D-mannose binding lectin prote... Potri.001G391200
[exp]
2.44 0.8601
AT5G53980 HD ATHB52 homeobox protein 52 (.1) Potri.007G135100
[exp]
6.63 0.8298
AT1G03940 HXXXD-type acyl-transferase fa... Potri.019G118000
[exp]
7.07 0.8203
AT1G30760 FAD-binding Berberine family p... Potri.006G128900
[exp]
7.74 0.7965
AT1G62420 Protein of unknown function (D... Potri.011G023301
[exp]
8.48 0.7634
AT3G23220 AP2_ERF ESE1 ethylene and salt inducible 1,... Potri.010G072600
[exp]
9.38 0.7662
AT3G12500 PR-3, PR3, CHI-... PATHOGENESIS-RELATED 3, basic ... Potri.004G182000
[exp]
9.94 0.7822 CHIA5.3
AT5G24580 Heavy metal transport/detoxifi... Potri.015G003900
[exp]
10.00 0.7803
AT5G57970 DNA glycosylase superfamily pr... Potri.001G044402
[exp]
13.49 0.7918
AT1G40390 DNAse I-like superfamily prote... Potri.003G046951
[exp]
19.44 0.7221

Potri.010G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.