Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16760 267 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G25230 56 / 6e-08 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT1G56090 51 / 7e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G25290 50 / 3e-06 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT5G20360 48 / 1e-05 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G32070 46 / 5e-05 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G48570 44 / 0.0002 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178900 [exp] 62 / 1e-10 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G248300 [exp] 52 / 6e-07 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.005G097300 [exp] 49 / 5e-06 AT1G56090 260 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G121100 [exp] 48 / 2e-05 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.014G149400 [exp] 47 / 2e-05 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G105100 [exp] 45 / 9e-05 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016826 [exp] 322 / 6e-105 AT3G16760 419 / 9e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035117 [exp] 58 / 4e-09 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 59 / 8e-09 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10002338 [exp] 57 / 2e-08 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 56 / 7e-08 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10031195 [exp] 54 / 8e-08 AT1G56090 260 / 8e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031774 [exp] 54 / 9e-08 AT1G56090 259 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025888 [exp] 52 / 9e-07 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 52 / 1e-06 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10008035 [exp] 51 / 2e-06 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.010G007000.1 pacid=42797397 polypeptide=Potri.010G007000.1.p locus=Potri.010G007000 ID=Potri.010G007000.1.v4.1 annot-version=v4.1 ATGAGCAACTTCAATTTCGATTTCGGAATCGGATCAAACCGACCCAAATCTTTAAACGATCAAAGGAACCCAAACCCATCTCCTTATTCATCTTCTACAC AACAATCTAAGCCTACGTGGCAACCCAATAAGCCATCATGGACGCACCAACCGGCACCAGCCCAGTCAATGGTCCGACCCGGTGGTTTGAATGGACCCGC TTCTATGGTGGGTGATATAACTGGGAAGAGTTGGAATTCGGGTATCGGTTCGGGTTCTGGTATTGGGATTGTTGAAAAGAACCCTAATTTGTTTTGTGAT CTTGTTACTTCTGCTATTGGAAATACCAAGGGTAGCAGTAATAGTAATGTTCCTTTGAAAAATGTTAATAAAAGCGCATATTCGATGGGGAATTTGGCTG ATTCTTTGCCGAAAACGAGTGGATCCACCGCCAAGAGTGGTGGAGGTTGGGTTGGTAATGATAATTTGGGTGGTTATTCCAGTGGATATAATAGAAATAG TGGTAATGCTAATGTTAGTGTTGGTGTTAATAAAAGTTCGAATCTTGGGGGGGCGTCGATGAAGAGTATGAGTGGTGGTGGAATGAGTGGAAGTAAGGAC CCTTTTAGTTCTTTGGTTGATTTTGGAATGAATCAGAAACAAGGTAATATTAATTCGGCTAGTAAAGATAATAAGCCGTCTGGCAATGCTACTGGTGATG CATTTGGTGCGTTTCAAAATGCTTCAAGTGCAAAATCGGTTCCATCAGTTGGTGTTGGTGCTAGCAATAATGGTTTCATGGGATCAAATACGAGTTCCAA GTCCAATATTGATGACTTTGGAATGTTCAACAATAGCTTTCCTACTCAGAAGCAGCAGGCTCCGGTTCAACCTTCAGTTGGTGATCCGCTTGACATGTTC TTCACACCTTCCTCGGGAAATGCTACAACAGTATCTGGAGGATCGGGAGGGCAGCCATTGTCGGAAGTTGATGATTGGGGATTGGATTCTGGGCTTGGAG GGGGAGGCGTGAATGATTCTCATGGTGTCACCACTGAGCTTGAAGGGCTTCCAGCTCCTCCTGCTGGGGTAACAGCTTCTGCAGCAAAGAACAAGGGCAT TGAAAATCAAAAACAGGGGCAATATGCAGATGCCATCAAGTGGCTGTCTTGGGCTGTGGTACTTCTTGAGAAAACAGGTGATAAGGCTTCCACCATGGAG GTTTTATCAACCAGAGCTTCATGTTATAAAGAAGTTGGAGAGTATAAGAAGGCAGTGGCTGATTGTTCAAAGGTGCTTGAACATGATGATGCGAATGTAT CTGTTCTTGTACAGCGTGCACTCCTGTATGAGAGTATGGAAAAGTACAGGCTCGGAGCAGAAGATCTGCGGGTTGTTCTGAAGATTGATCCTGCCAACAG GGTTGCAAGGAGTACTGTTCACCGTTTGACCAAAATGGCAGACTAG
AA sequence Show only first row Show all	>Potri.010G007000.1 pacid=42797397 polypeptide=Potri.010G007000.1.p locus=Potri.010G007000 ID=Potri.010G007000.1.v4.1 annot-version=v4.1 MSNFNFDFGIGSNRPKSLNDQRNPNPSPYSSSTQQSKPTWQPNKPSWTHQPAPAQSMVRPGGLNGPASMVGDITGKSWNSGIGSGSGIGIVEKNPNLFCD LVTSAIGNTKGSSNSNVPLKNVNKSAYSMGNLADSLPKTSGSTAKSGGGWVGNDNLGGYSSGYNRNSGNANVSVGVNKSSNLGGASMKSMSGGGMSGSKD PFSSLVDFGMNQKQGNINSASKDNKPSGNATGDAFGAFQNASSAKSVPSVGVGASNNGFMGSNTSSKSNIDDFGMFNNSFPTQKQQAPVQPSVGDPLDMF FTPSSGNATTVSGGSGGQPLSEVDDWGLDSGLGGGGVNDSHGVTTELEGLPAPPAGVTASAAKNKGIENQKQGQYADAIKWLSWAVVLLEKTGDKASTME VLSTRASCYKEVGEYKKAVADCSKVLEHDDANVSVLVQRALLYESMEKYRLGAEDLRVVLKIDPANRVARSTVHRLTKMAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16760			Tetratricopeptide repeat (TPR)...		Potri.010G007000 [exp]	0	1
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	2.82	0.8999
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.006G084000 [exp]	6.16	0.8748	ASP1.2
AT5G42090			Lung seven transmembrane recep...		Potri.003G147700 [exp]	6.24	0.8989
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	7.87	0.9162	Pt-FLA14.7
AT1G02500		METK1, AtSAM1, ...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.010G153500 [exp]	12.36	0.8569	Pt-SAMS.3,AdoMet3
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	23.06	0.8946
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.002G163200 [exp]	24.65	0.8636	AN.1
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	24.91	0.8848
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.002G085300 [exp]	27.96	0.8761
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	31.74	0.8644

Compare expression of checked genes

Potri.010G007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.