Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06790 270 / 3e-91 plastid developmental protein DAG, putative (.1.2) AT3G15000 177 / 2e-53 cobalt ion binding (.1) AT1G11430 165 / 2e-50 plastid developmental protein DAG, putative (.1) AT1G32580 154 / 3e-46 plastid developmental protein DAG, putative (.1) AT2G33430 151 / 3e-45 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 149 / 4e-44 plastid developmental protein DAG, putative (.1) AT4G20020 135 / 3e-37 unknown protein AT1G72530 117 / 3e-32 plastid developmental protein DAG, putative (.1.2) AT5G44780 116 / 2e-29 unknown protein AT1G53260 82 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112200 [exp] 182 / 5e-55 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 181 / 2e-54 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.011G032900 [exp] 166 / 9e-51 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 149 / 3e-44 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 148 / 8e-44 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 140 / 1e-38 AT4G20020 239 / 2e-74 unknown protein Potri.004G218650 [exp] 98 / 5e-23 AT4G20020 187 / 5e-53 unknown protein Potri.004G218800 [exp] 97 / 1e-22 AT4G20020 182 / 8e-51 unknown protein Potri.010G237200 [exp] 71 / 9e-14 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016825 [exp] 273 / 5e-92 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10014696 [exp] 182 / 4e-55 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10043130 [exp] 182 / 3e-54 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10032618 [exp] 179 / 6e-54 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10032619 [exp] 171 / 1e-52 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10018398 [exp] 166 / 3e-51 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 166 / 2e-50 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 154 / 7e-46 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10011789 [exp] 152 / 5e-45 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 143 / 3e-40 AT4G20020 271 / 1e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G007200.3 pacid=42799731 polypeptide=Potri.010G007200.3.p locus=Potri.010G007200 ID=Potri.010G007200.3.v4.1 annot-version=v4.1 ATGGCGTATATCACCGCCAGGCGTAACTTAGCAACGCTCCTAACCCGAGCTCTCTCTTCTTCCTCTTCACGCACTCGCTTCTCTCCTGCTCTCTTCAACA AAATCCAAACCTCACTTATCCCGGACTCAGTCAAAACCCTGACCCGATCCAAAACAACCGGGTCGGGCTACTCTCCATTAAACGACCCGTCACCAAACTG GACAAATCGGCCGCCAAAAGAAACGATTCTTCTCGATGGCTGTGATTATAATCATTGGCTTATTGTTATGGAGTTTCCAAATGACCCCAAACCCACAGAA GAAGAAATGATTAACGCTTATGTCAAAACCCTTTCTTCTGTTTTGGGCAGTGAGGAGGAAGCAAAGAAGAGTATTTATTCCGTTTCTACGACGACGTATA CTGGGTTTGGTGCTTTGATATCTGAAGAGCTTTCTTATAAAGTTAAAGCGTTGCCTGGAGTGCTTTGGGTTTTGCCAGACTCGTATCTTGATGTTCCTAA CAAAGATTATGGAGGGGATTTGTACGAGGATGGGAAGGTCATCCATAGGCCCCAATATAGGTACAATGAAAGGCAGCAGCAGACTAGGAACAGGCCTCGA CCTCGGTATGATAGGCGCCGTGAAACAATGCAGGTTGAGAGGAGAGAAACAGTGCAAAGACAGAATTGGAGCCAAGATCCGAGACCACCTGTAAAGCAAC CCGCATCGGATAATGTCCAGAATTCCACCCAGGGTGGTGGAGGAGAGTTCTCTATGAATCAAGGGCAGTTTAACCAGAGCACGTAG
AA sequence Show only first row Show all	>Potri.010G007200.3 pacid=42799731 polypeptide=Potri.010G007200.3.p locus=Potri.010G007200 ID=Potri.010G007200.3.v4.1 annot-version=v4.1 MAYITARRNLATLLTRALSSSSSRTRFSPALFNKIQTSLIPDSVKTLTRSKTTGSGYSPLNDPSPNWTNRPPKETILLDGCDYNHWLIVMEFPNDPKPTE EEMINAYVKTLSSVLGSEEEAKKSIYSVSTTTYTGFGALISEELSYKVKALPGVLWVLPDSYLDVPNKDYGGDLYEDGKVIHRPQYRYNERQQQTRNRPR PRYDRRRETMQVERRETVQRQNWSQDPRPPVKQPASDNVQNSTQGGGGEFSMNQGQFNQST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06790			plastid developmental protein ...		Potri.010G007200 [exp]	0	1
AT1G12830			unknown protein		Potri.001G323000 [exp]	2.00	0.8857
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	3.16	0.8816
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	4.24	0.8755	Pt-ATTIM23.1
AT4G21520			Transducin/WD40 repeat-like su...		Potri.011G043000 [exp]	5.47	0.8579
AT3G52230			unknown protein		Potri.010G233400 [exp]	5.65	0.8686
AT4G03120			C2H2 and C2HC zinc fingers sup...		Potri.003G058400 [exp]	6.00	0.8542
AT2G16070		PDV2	plastid division2 (.1.2)		Potri.004G149900 [exp]	6.48	0.8320
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Potri.001G071700 [exp]	6.70	0.8446
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	7.74	0.8402
AT1G80245			Spc97 / Spc98 family of spindl...		Potri.001G081300 [exp]	8.66	0.8303

Compare expression of checked genes

Potri.010G007200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.