Plant FIBer expression Database

Potri.010G007402 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G045466
[exp]
45 / 1e-06 ND /
Potri.001G221051
[exp]
44 / 3e-06 ND /
Potri.019G036220
[exp]
42 / 4e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G007402.1 pacid=42798667 polypeptide=Potri.010G007402.1.p locus=Potri.010G007402 ID=Potri.010G007402.1.v4.1 annot-version=v4.1
ATGGAAGGAGACGTTAGCAGCGATAATGGAGCTATTCTCGAATCAATGGGGCGGGTATTGTGGCAGACATCCCTCGCCACCGTGATGCACGCCGGCTTAC
CAAAAATGCTAGCGTCCTCTGGCTATAAAAGCCAGAGGAGGAGCCGCACCAAAAAAAAAGAAGAAAAAACGCGGGGGGGTGGGGGGACAAAGAGAGAACG
ACAGAGGAAAGTAAGAAAACAGAGAGGGAAAAATAGAAAAAAAAAAAGACGAGACAGAGAGGAAAAAGGAGAACAAAAGGAGGGGGAAGCAGAACAGCAG
GGAGAACGAGACAACAAAGAAAAACAGAGGGAAGAGAGGAAAGGCTACAGTGAGGAGAAAAACAGAGAGGTGACAGCGACGAGAGAGGAAAGCAACAAAA
GCAGAGGGAGAGGGGAGCATAAGGAAGAGAAAACAGAGGGAGGAAGAGCATAA
AA sequence
>Potri.010G007402.1 pacid=42798667 polypeptide=Potri.010G007402.1.p locus=Potri.010G007402 ID=Potri.010G007402.1.v4.1 annot-version=v4.1
MEGDVSSDNGAILESMGRVLWQTSLATVMHAGLPKMLASSGYKSQRRSRTKKKEEKTRGGGGTKRERQRKVRKQRGKNRKKKRRDREEKGEQKEGEAEQQ
GERDNKEKQREERKGYSEEKNREVTATREESNKSRGRGEHKEEKTEGGRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G007402
[exp]
0 1
AT5G26250 Major facilitator superfamily ... Potri.008G150901
[exp]
15.06 0.9083
AT5G39840 ATP-dependent RNA helicase, mi... Potri.017G081900
[exp]
19.33 0.9674
Potri.002G188650
[exp]
23.06 0.8561
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Potri.014G057101
[exp]
24.28 0.8119
Potri.002G208830
[exp]
30.00 0.8073
AT5G28780 PIF1 helicase (.1) Potri.013G071501
[exp]
30.19 0.9082
AT2G13542 unknown protein Potri.013G008750
[exp]
30.65 0.9657
AT4G33230 Plant invertase/pectin methyle... Potri.003G021300
[exp]
32.78 0.9282
AT3G54510 Early-responsive to dehydratio... Potri.003G200900
[exp]
32.92 0.8509
AT2G33690 Late embryogenesis abundant pr... Potri.005G145200
[exp]
33.83 0.9066

Potri.010G007402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.