Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28890 263 / 5e-78 AtRLP43 receptor like protein 43 (.1.2) AT4G13810 229 / 7e-66 AtRLP47 receptor like protein 47 (.1.2) AT3G05360 213 / 3e-59 AtRLP30 receptor like protein 30 (.1) AT3G05660 202 / 2e-55 AtRLP33 receptor like protein 33 (.1) AT2G33060 201 / 4e-55 AtRLP27 receptor like protein 27 (.1) AT3G11010 195 / 1e-52 AtRLP34 receptor like protein 34 (.1) AT3G05650 193 / 4e-52 AtRLP32 receptor like protein 32 (.1) AT2G32660 187 / 2e-51 AtRLP22 receptor like protein 22 (.1) AT3G25020 187 / 4e-50 AtRLP42 receptor like protein 42 (.1) AT3G25010 187 / 6e-50 AtRLP41 receptor like protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G008300 [exp] 780 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 776 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G026000 [exp] 771 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G028600 [exp] 670 / 0 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G010445 [exp] 668 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.011G055000 [exp] 664 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G028500 [exp] 664 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G027400 [exp] 655 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G014625 [exp] 650 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 214 / 1e-58 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002214 [exp] 202 / 5e-57 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10032335 [exp] 205 / 3e-56 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 204 / 5e-56 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10004310 [exp] 197 / 1e-53 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10026415 [exp] 197 / 3e-53 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10011039 [exp] 191 / 1e-50 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004313 [exp] 186 / 8e-50 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10006824 [exp] 180 / 7e-49 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10019693 [exp] 181 / 1e-48 AT2G33050 295 / 1e-91 receptor like protein 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G009750.1 pacid=42797195 polypeptide=Potri.010G009750.1.p locus=Potri.010G009750 ID=Potri.010G009750.1.v4.1 annot-version=v4.1 ATGGGGTTTCCACCTATTTCATCTCTCTCTTTCATTCTGTTTCTCTTCCATTTCCATTCAACAATTTCTTCATCTCATTTCTGTGCTCTTCACCAAAGTC CTTCTTTGCTCCAATTCAAAGAATCCTTTTCCATTTATAGCTCTGCTTCAATTCGTTGCCACCATCCCAAGACAGAGTCGTGGAAAGAGGGTACAGACTG CTGCTTGTGGGATGGAGTCACTTGTGACCTGAAAACCGGGCATGTCACTGGACTGGACCTTGCTTGCAGCATGCTTTATGGCACCCTCCATTCCAATAGC ACCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATCATTTCAATAGCTCCCATATTTCTTCTCGATTTGGCCATCGAGAAGCAATTT CTTTTGACAAACTTGTTCGAAACCTAACCAAGCTTAGAGAACTCGATTTGAGTTGGGTACACATGTCACTGGTTGTACCCAGTTCCTTGATGAATCTGTC TTCTTCTCTGTCATCACTCAAACTCAATGGCTGCGGATTGCAAGGAAAACTCATATCCTTAATGGGGAAATTTAAGCACCTTCAGGGAAATTCCCGGGTT ACATCTTTCTCCTCCGAGCTTGGTAATCTTACACAGCTCATTTATTTAGACCTCTCAATTAACAATTTAAGCGATTTATTAAATAATCAACTAATAGGCC CTATCCATTCTCAATTAAAGACCCTTTCAAATCTACAATATCTATATTTATACGTTAATTTGTTCAATGGAACAATACCATCCTTTTTGTCTGCTCTTCC TTCTTTATATTATCTTGATTTGAGCAATAACCACTTGCACGGTACAATCCCAAGTTTGGTTTTCAAACAACAGAACTTGGAAGTCCTTATTCTTGCGTCC AATAGTGGATTGACAGGTGAGATTTCTTCTTCTATTTGCAAGCTGAGATTCCTTCAGGTCCTGGACTTGTCCAACAACAGCTTGAGTGGTTCTCCGCCAC AATGTTTGGGGAACTTCAGCAACATGCTCTCAGTTTTGCATCTAGGCATGAACAATCTTCAAGGCACCATCCCTTCAACATTTTCAAAGGATAATAGCTT GGAATATCTCAACCTCAATGGAAATGAATTAGAAGGGAAAATACCACCGTCTATCATCAATTGCACAATGATTCTTGACATCTCTGACAATGATTTTAGT GGGTCATTGCCAACTGGGTATTTCAATAGTCTTGAAGCAATGATGGCCTCGGATCAAAACATGATTTACATGAATGCAACAAATTACTCTAGCTATGTCT ATTCCATAGAAATGACATGGAAAGGTGTAGAAATTGAGTTTCCAAAGATACAAAGTACCATCAGAATACTCGATTTGTCAAAAAACAATTTCACTGGAGA GATTCCAAAGGTGATCGGAAAGCTTAAAGCACTCCAACAACTCAACCTTTCTCATAATTCCCTTACAGGTCAAATCCAATCATCATTAGGAAATTTGACC AATTTGGAATCATTAGATCTATCTTCAAATTTGCTTACCGGAAGGATTCCAACGCAGCTGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCACATA ACCAGTTCGAGGGGCGTATACCAAGTGGAGAGCAGTTCAACACCTTTACTGTAACCTCATTTGAAGGAAACTTGGGTTTATGTGGATTTCAAGTACTAAA AGAATGCTACGGTGATGAGGCACCATCATTCCTGCCATCAAGCTTTGATGAAGGAGATGATTCAACATTGTTTGGAGATGGATTTGGATGGAAAGCTTTG ACAATGGGGTATGGATGTGGGTTTGTGTTCGGAGTTGCAACAGGATACGATGTGTTTAGAACAAAAAAACCTTCATGGTTTTTTAGGATGGTTGAAGGTA TATGGAATCTCAAGAGCAAGAAAACAAAGAAGAATGTTGGCAGATGTGGTGCTAGAAGAAACTAG
AA sequence Show only first row Show all	>Potri.010G009750.1 pacid=42797195 polypeptide=Potri.010G009750.1.p locus=Potri.010G009750 ID=Potri.010G009750.1.v4.1 annot-version=v4.1 MGFPPISSLSFILFLFHFHSTISSSHFCALHQSPSLLQFKESFSIYSSASIRCHHPKTESWKEGTDCCLWDGVTCDLKTGHVTGLDLACSMLYGTLHSNS TLFSLHHLQKLDLSDNHFNSSHISSRFGHREAISFDKLVRNLTKLRELDLSWVHMSLVVPSSLMNLSSSLSSLKLNGCGLQGKLISLMGKFKHLQGNSRV TSFSSELGNLTQLIYLDLSINNLSDLLNNQLIGPIHSQLKTLSNLQYLYLYVNLFNGTIPSFLSALPSLYYLDLSNNHLHGTIPSLVFKQQNLEVLILAS NSGLTGEISSSICKLRFLQVLDLSNNSLSGSPPQCLGNFSNMLSVLHLGMNNLQGTIPSTFSKDNSLEYLNLNGNELEGKIPPSIINCTMILDISDNDFS GSLPTGYFNSLEAMMASDQNMIYMNATNYSSYVYSIEMTWKGVEIEFPKIQSTIRILDLSKNNFTGEIPKVIGKLKALQQLNLSHNSLTGQIQSSLGNLT NLESLDLSSNLLTGRIPTQLGGLTFLAILNLSHNQFEGRIPSGEQFNTFTVTSFEGNLGLCGFQVLKECYGDEAPSFLPSSFDEGDDSTLFGDGFGWKAL TMGYGCGFVFGVATGYDVFRTKKPSWFFRMVEGIWNLKSKKTKKNVGRCGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	0	1
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	2.44	0.9108
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	3.74	0.8936
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	4.24	0.8934
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Potri.002G240700 [exp]	8.00	0.8546
					Potri.013G032900 [exp]	9.48	0.8671
AT3G47570			Leucine-rich repeat protein ki...		Potri.015G037400 [exp]	9.94	0.8678
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	10.95	0.8703
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.006G022300 [exp]	11.48	0.8160
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	12.24	0.8566
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	12.24	0.8724

Compare expression of checked genes

Potri.010G009750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.