Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 319 / 7e-94 AtRLP7 receptor like protein 7 (.1) AT1G45616 315 / 1e-92 AtRLP6 receptor like protein 6 (.1) AT4G13920 310 / 1e-91 AtRLP50 receptor like protein 50 (.1) AT3G11010 307 / 2e-90 AtRLP34 receptor like protein 34 (.1) AT1G71400 302 / 5e-89 AtRLP12 receptor like protein 12 (.1) AT2G33060 301 / 7e-89 AtRLP27 receptor like protein 27 (.1) AT3G05660 294 / 6e-86 AtRLP33 receptor like protein 33 (.1) AT2G32660 282 / 4e-84 AtRLP22 receptor like protein 22 (.1) AT3G25010 288 / 1e-83 AtRLP41 receptor like protein 41 (.1) AT3G25020 288 / 2e-83 AtRLP42 receptor like protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031251 [exp] 1619 / 0 AT1G45616 380 / 1e-115 receptor like protein 6 (.1) Potri.012G007932 [exp] 1574 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1) Potri.012G025400 [exp] 1328 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G028500 [exp] 1301 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G028600 [exp] 1273 / 0 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G007901 [exp] 1101 / 0 AT3G25010 300 / 6e-88 receptor like protein 41 (.1) Potri.012G010101 [exp] 1082 / 0 AT1G45616 379 / 6e-115 receptor like protein 6 (.1) Potri.011G054500 [exp] 1073 / 0 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G027400 [exp] 1070 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 356 / 3e-107 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 330 / 1e-97 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 327 / 5e-96 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10032335 [exp] 320 / 3e-95 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 316 / 6e-94 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10006825 [exp] 305 / 1e-88 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10014910 [exp] 300 / 6e-88 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10004310 [exp] 297 / 3e-87 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10011039 [exp] 295 / 3e-83 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10011064 [exp] 283 / 5e-81 AT1G45616 366 / 2e-111 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G010100.2 pacid=42799405 polypeptide=Potri.010G010100.2.p locus=Potri.010G010100 ID=Potri.010G010100.2.v4.1 annot-version=v4.1 ATGCTTTACGGCACCCTCCTTCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAACACCTCAACCTCTCTTTCAATGATTTCAACTCCTCCCATATTT CTTCTCGATTTGGCCAGTTCTTCAATCTAACACATCTTAACCTAAGTGGTTCAGATCTTGCAGGCCAAGTTCCGTCAGAAATCTCTCACCTCTCCAAAAT GGTTTCACTTGATCTCTCTTGGAACTACGATCTAAGTCTAGAACCACTTTGTTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCCATCTG AGTTGGGTAAACATGTCACTAGTTGTTCCTGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCACTTGAAGTCCTCGAATGTGGATTGCAAGGAAAAC TCCCATCCTCAATGGGGAAATTTAAGCACCTCCAGTACTTGGATCTTGGAGGGAACAATCTTACTAGTCCAATTCCATATGATTTTGAGCAACTCACTGA GTTGGTTTCACTTGATCTCTCTGGAAACGGCTATCTAAGTCTAGAACCAATTTCCTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCGAT CTGAGTTCGGTAGACATGTCACTACTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCACTCAAACTCATTGACTGTAGATTGCAAGGAA AACTCCCATCCTTAATGGGGAAATTTAAGCACCTCCAGTACTTGCGTCTTCGAGGGAACAATCTTACTGGTTCAATTCCATGTGATTTTGAGCAACTCAA AGAGTTGGTTTCACTTGATCTCTCTGAAAACTTCTATCTAAGTCCAGAACCAATTTGTTTTGACAAGCTTGTTCGAAACTTAACCAAGCTTAGCGAACTC AATTTGGCTTCTGTAAATATGTCTTTGGTTGCACCTAATTCCTTGACGAATCTGTCCTCTTCTTTGTCATTTCTCTCCCTCAGTAATTGTGGATTGCAGG GGAAATTCCCGGGTAACATCTTTCTCCTCCCAAACCTTGAATTTCTCTATTTGTCACAAAACAAAGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAG TAATGTCCTCTTTCTGTTGGGTCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTAATCTAAAGTCATTAGAATATATGTCTCTT CGTAATTGTAACATTATAAGGTCAGATCTGGCTCTGCTTGGTAATCTCACACAGCTCACTTATTTAGATCTCTCAAGTAACAATTTTATAGGTGAGATCC CATCATCAATTGGAAACAATACCTTTTCAAATTTAAAATATCTATTATTATTTGATAACTTGTTCAATGGAACAATACCATCCTTTTTGTTTGCTCTTCC CTCTTTACAATTTCTTAACCTTCATAACAATAATCTCATAGGCAATATAAGTGAATTCCAACACGATTCATTGGTATACCTTGATTTGAGCAATAACCAC TTGCATGGTACAATCCCAAGTTCAATTTTCAAACAAGAGAACTTGGAAGCCCTCATTCTTGTGTCCAATAGTAAATTGACAGGTGAGATTTCTTCTTCTA TTTGCAAGCTGAGATCCCTTGAGGTCCTAGACTTGTCCGACAACAGCTTGAATGGTTCTATACCATTATGTTTGGGGAACTTCAGCAGCAAGCTCTCAGT ATTGCATCTAGCCATGAACAATCTTCAAGGCACTATCCCTTCAACATTTTCAAAGGGTAATAGCTTGGAATATCTCGACCTCAATGGAAATGAATTAGAA GGGGAAATATCACCATCTATCATCAACTGCACAATGTTGGAAGTTCTTGATCTTGGTAACAATAAGATTGAGGATACATTTCCTTATTTTCTAGAAACGC TTCCGGAGCTGCAAATTCTAATTCTAAAATTCAATAACCTCCAAGGTTTTGTGAAGGGTCCGACTGCAGATAATTCCTTCTTTAAATTATGGATTTTTGA CATTTCTAACAATAATTTTAGTGGGCCGTTGCCAACAGGGTATTTTAATACTCTTGAAGCAATGATGATCTCAGATCAAAACATGATTTACCTTAACACG ACAAATGACATTGTCTGTGTTCATTCCATAGAAATGACATGGAAAGGTGTAGAAATTAAGTTTCCGAAGATCCGAAGTACCATCAGAGTACTAGATTTGT CAAATAACAGTTTTACTGGAGAGATTCCAAAGGTGATCGGAAAGCTTAAAGCACTACAACAACTCAACCTCTCTCATAATTTCCTTACAGGTCATATCCA ATCATCATTGGAAAATTTGACCAATTTGGAATCATTAGACCTATATTCAAATTTGCTTACTGGAAGGATTCCAATGCAGATGGCATATCTAACATTTCTT GCAACCCTAAACCTTTCACATAACCAGCTGGAGGGGCCCATACCAAGTGGAGAGCAATTCAACACCTTTGATGCAAGATCATTTGAAGGAAACTCGGGTT TATGTGGCTTTCAAGTGCTAAAAGAATGCTACGGTGACGAGGCACCATCATTGCCGCCATCAAGCTTTAATGAAGGAGATGATTCAACATTGTTTGGAGA AGGATTTGGATGGAAAGCTGTGACAATAGGGTATGGATGCGGGTTTCTGTTTGGAGTTGCAACGGGATACGTTGTGTTTAGAACAAATAAACCTTCATGG TTACTTAGGATGGTTGAAGATATATGGAATCTCAAGAGCAAAAACACGAAGAAGAATTTCCGCAGATATGGTGCTAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.010G010100.2 pacid=42799405 polypeptide=Potri.010G010100.2.p locus=Potri.010G010100 ID=Potri.010G010100.2.v4.1 annot-version=v4.1 MLYGTLLPNNSLFSLHHLQHLNLSFNDFNSSHISSRFGQFFNLTHLNLSGSDLAGQVPSEISHLSKMVSLDLSWNYDLSLEPLCFDKLVRNLTKLRELHL SWVNMSLVVPDSLMNLSSSLSSLEVLECGLQGKLPSSMGKFKHLQYLDLGGNNLTSPIPYDFEQLTELVSLDLSGNGYLSLEPISFDKLVRNLTKLRELD LSSVDMSLLVPDSLMNLSSSLSSLKLIDCRLQGKLPSLMGKFKHLQYLRLRGNNLTGSIPCDFEQLKELVSLDLSENFYLSPEPICFDKLVRNLTKLSEL NLASVNMSLVAPNSLTNLSSSLSFLSLSNCGLQGKFPGNIFLLPNLEFLYLSQNKGLTGSFPSSNLSNVLFLLGLSNTRISVYLENDLISNLKSLEYMSL RNCNIIRSDLALLGNLTQLTYLDLSSNNFIGEIPSSIGNNTFSNLKYLLLFDNLFNGTIPSFLFALPSLQFLNLHNNNLIGNISEFQHDSLVYLDLSNNH LHGTIPSSIFKQENLEALILVSNSKLTGEISSSICKLRSLEVLDLSDNSLNGSIPLCLGNFSSKLSVLHLAMNNLQGTIPSTFSKGNSLEYLDLNGNELE GEISPSIINCTMLEVLDLGNNKIEDTFPYFLETLPELQILILKFNNLQGFVKGPTADNSFFKLWIFDISNNNFSGPLPTGYFNTLEAMMISDQNMIYLNT TNDIVCVHSIEMTWKGVEIKFPKIRSTIRVLDLSNNSFTGEIPKVIGKLKALQQLNLSHNFLTGHIQSSLENLTNLESLDLYSNLLTGRIPMQMAYLTFL ATLNLSHNQLEGPIPSGEQFNTFDARSFEGNSGLCGFQVLKECYGDEAPSLPPSSFNEGDDSTLFGEGFGWKAVTIGYGCGFLFGVATGYVVFRTNKPSW LLRMVEDIWNLKSKNTKKNFRRYGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.010G010100 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	1.73	0.9816
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	3.00	0.9759
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	3.16	0.9808
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.014G155100 [exp]	3.87	0.9412
AT4G27290			S-locus lectin protein kinase ...		Potri.001G409300 [exp]	4.00	0.9616
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	4.47	0.9719
AT2G25440		AtRLP20	receptor like protein 20 (.1)		Potri.012G007800 [exp]	5.47	0.9572
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G007932 [exp]	6.00	0.9531
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	6.32	0.9682
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024140 [exp]	6.63	0.9539

Compare expression of checked genes

Potri.010G010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.