Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06810 1251 / 0 IBR3 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) AT3G45300 89 / 2e-18 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219000 [exp] 1492 / 0 AT3G06810 1236 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.009G011700 [exp] 94 / 3e-20 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Potri.006G101800 [exp] 43 / 0.0007 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033467 [exp] 1316 / 0 AT3G06810 1258 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10020908 [exp] 1310 / 0 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10036122 [exp] 93 / 1e-19 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01636 [poplar] [flax] APH Phosphotransferase enzyme family CL0016 [poplar] [flax] PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0544 [poplar] [flax] AcylCoA_ox_dh_N PF02771 [poplar] [flax] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain CL0087 [poplar] [flax] Acyl-CoA_dh PF08028 [poplar] [flax] Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G010448.1 pacid=42797512 polypeptide=Potri.010G010448.1.p locus=Potri.010G010448 ID=Potri.010G010448.1.v4.1 annot-version=v4.1 ATGGCGAATCGTACGTATGATTTGTTAGGGCAAGTTCAAGCAGGTCACCAATTCGATCACGACTCCTTATTCCGCTATGCCTCTGTCCATGTCCCTGGCT TCCCTTCCTCTGCAGCTTCAACCTTCACCGTCAAACAGTTTGGACATGGACAATCGAATCCGACGTTTTTATTGGAAGTGGGAAATGGAGGTTCCGTGAA ACGCTACGTATTGAGGAAGAAACCGCCTGGTAAATTGCTTCAGTCTGCCCATGCTGTGGATAGAGAATATCAGGTTCTTCGGGCGCTTGGTGAACATACT GAAGTTCCAGTTCCCAAAGTGTTTTGTGGGTGTATGGATGCGAGTGTGATTGGAACTGATTTTTACATCATGGAGTTTTTGGAAGGACGCATTTTCATGG ATCCTAAGCTTCCGGGTTTGGCGCCGGAGAGGAGGGAGGCAATCTATAGAGAAACTGCCAAAGTATTGGCTGCTTTACATTCTGTTGATGTGGATGCTAT TGGTTTAGGAAAATATGGACGGCGAGATAACTATTGTAAAAGACAGGTAGAGAGATGGACCAAACAATACATTGCATCAACTGGTGATAGTAGGTATCCG AGTAATCCAAAGATGTTAGAGCTGGCTCGTTGGTTGCAGCAACATATTCCTAGTGAAGATTCCTCAGGAGAAGGAATAGTTCATGGGGACTTTCGCATTG ATAATGTTGTATTTCATCCCATTGAGGATCGAGTAATTGGTATTCTCGACTGGGAATTATCCACATTAGGAAACCAGATGACTGATGTTGCGTACAGCTG TTTGGCTTACATTGTGGATATTAACCATGAAAATCAACAAGTGGGTAAAGGCTTTGAACTTACCAGAATTCCAGAAGGAATTCCTTCACAAGCAGAATAT CTGGCAGGATACTGCTCTGCATCTGGAAAATCATGGCCTGCTGCTGTGTGGAAGTTCTATATTTCCTTGGCTATGTTTCGTGGGGCAGCAATCCTTGCAG GGATATACAGTCGTTGGCTTATGGGCAATGCCTCAGGAGGTGAGCGTGCTCAAAATGCAGGAAAGCAAGCTAATGATCTTGTAGACTCTGCATGGGCGTA TATTGCAAGAAAATCTGTGCTCCCTAATCACCCTCCTCCTGATCCAATTGCTCGAGATTACATGAAACAACAATTTGGTGGAGGGAATGAAAGTGGGAGG TTTGTTCCTAGTGTAAAGGTCCTAAAGTTGAGAAACAAGTTAATCAAGTTTATGGAAGATCACATTTACCCCATGGAAAATGAGTTCTATAAACTTGCTC AGTCTTCTTCACGTTGGACAGTGCACCCAGAGGAAGAGAGTTTAAAGGAGCTGGCTAAGAAAGAAGGATTGTGGAACTTGTGGATATCTTTTGATAGTGC TGAAAGAGCTAAAAAATTACTATTTGATGAAAGTAGTCGCATGGTTTCTAATGGTGAGCATGATCAGTTCCTTGGTGCGGGCCTCTCAAACCTTGAATAT GGATACCTTTGTGAGATCATGGGTCGTTCTGTTTGGGCACCGCAGGTGTTCAATTGTGGTGCACCCGACACTGGAAATATGGAGGTATTGTTGCGCTATG GCAATAAAGAACAGCTACTCGAATGGCTAGTTCCATTGCTTCAGGGAAAGATCCGCTCTGGATTTGCAATGACAGAACCACAAGTTGCATCATCTGATGC AACAAATATTGAGTGTTCCATTAAAAGAGAAGGGGATTCATACATCATTAATGGTAGGAAATGGTGGACGAGTGGCGCAATGGATCCAAGGTGTAAAGTT CTTATAGTCATGGGAAAAACAGACTTCACTGCTGCTAATCACAAGCAGCAGTCTATGATATTAGTAGACATTCAGACTCCAGGTGTGCACATTAAAAGGC CACTCATGGTCTTTGGCTTCGACGATGCACCTCATGGCCATGCTGAAGTTGTATTCGACAATGTACGTGTTCCTGCAAAGAACATTCTACTGGGAGAAGG GCGTGGATTTGAGATTGCACAGGGTAGACTGGGCCCTGGAAGATTGCACCACTGCATGAGATTGATAGGTGCTTCTGAGCGTGGCATGCAGATGATGGTT CAAAGAGCTCTCAGCAGAAAAGCATTTGGAAAATTAATTGCAGAGCATGGTTCTTTTCGTTCAGATGTTGCAAAGTGTCGAATAGAGCTTGAGAAGACCA GACTATTGGTTCTTGAGGCAGCTGATCAGCTTGATCGGTTTGGAAACAAAAAAGCCCGTGGTACCATTGCTATGGCCAAGGTAGCAGCTCCAAATATGGC ACTCATGGTTCTTGACACGGCAATGCAAGTTCATGGTGCGGCTGGTGTATCATCCGACACAGTTTTGGCCCATCTTTGGGCAACTTCAAGAACATTGAGA ATTGCAGATGGCCCTGATGAAGTTCACTTGGGTACCATTGCCAAGTTAGAATTGCGGAGAGCTAAGCTTTAA
AA sequence Show only first row Show all	>Potri.010G010448.1 pacid=42797512 polypeptide=Potri.010G010448.1.p locus=Potri.010G010448 ID=Potri.010G010448.1.v4.1 annot-version=v4.1 MANRTYDLLGQVQAGHQFDHDSLFRYASVHVPGFPSSAASTFTVKQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVDREYQVLRALGEHT EVPVPKVFCGCMDASVIGTDFYIMEFLEGRIFMDPKLPGLAPERREAIYRETAKVLAALHSVDVDAIGLGKYGRRDNYCKRQVERWTKQYIASTGDSRYP SNPKMLELARWLQQHIPSEDSSGEGIVHGDFRIDNVVFHPIEDRVIGILDWELSTLGNQMTDVAYSCLAYIVDINHENQQVGKGFELTRIPEGIPSQAEY LAGYCSASGKSWPAAVWKFYISLAMFRGAAILAGIYSRWLMGNASGGERAQNAGKQANDLVDSAWAYIARKSVLPNHPPPDPIARDYMKQQFGGGNESGR FVPSVKVLKLRNKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEESLKELAKKEGLWNLWISFDSAERAKKLLFDESSRMVSNGEHDQFLGAGLSNLEY GYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQLLEWLVPLLQGKIRSGFAMTEPQVASSDATNIECSIKREGDSYIINGRKWWTSGAMDPRCKV LIVMGKTDFTAANHKQQSMILVDIQTPGVHIKRPLMVFGFDDAPHGHAEVVFDNVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGASERGMQMMV QRALSRKAFGKLIAEHGSFRSDVAKCRIELEKTRLLVLEAADQLDRFGNKKARGTIAMAKVAAPNMALMVLDTAMQVHGAAGVSSDTVLAHLWATSRTLR IADGPDEVHLGTIAKLELRRAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	0	1
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	1.73	0.8490
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.001G233400 [exp]	3.31	0.8036
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029800 [exp]	6.00	0.8111	DHQD2
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	7.54	0.8250
AT4G14103			F-box/RNI-like superfamily pro...		Potri.001G395000 [exp]	8.48	0.8070
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	11.66	0.8185
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.008G191400 [exp]	13.26	0.7845	ALA3.2
AT1G78800			UDP-Glycosyltransferase superf...		Potri.001G393000 [exp]	13.41	0.8025
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G059800 [exp]	15.32	0.8126
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	16.24	0.8071

Compare expression of checked genes

Potri.010G010448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.