Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16730 633 / 0 HEB2 hypersensitive to excess boron 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219100 [exp] 1085 / 0 AT3G16730 611 / 0.0 hypersensitive to excess boron 2, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024756 [exp] 704 / 0 AT3G16730 610 / 0.0 hypersensitive to excess boron 2, unknown protein Lus10009771 [exp] 697 / 0 AT3G16730 603 / 0.0 hypersensitive to excess boron 2, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06278 [poplar] [flax] CNDH2_N Condensin II complex subunit CAP-H2 or CNDH2, N-terminal PF16858 [poplar] [flax] CNDH2_C Condensin II complex subunit CAP-H2 or CNDH2, C-term PF16869 [poplar] [flax] CNDH2_M Condensin II complex subunit CAP-H2 or CNDH2, mid domain
Representative CDS sequence Show only first row Show all	>Potri.010G010480.1 pacid=42799273 polypeptide=Potri.010G010480.1.p locus=Potri.010G010480 ID=Potri.010G010480.1.v4.1 annot-version=v4.1 ATGATTAATAACAACAAAGAAGAAGCAAGCAAGTACCACACAGTACAAGCAGAGCGTGATTTAGAGGCTAATTGGGAAGTCGATCTTTCAAAAAAGCTTG AAGATTATTTGTTAAAGATCTGTTCTGGTGAAATTGCTGGAAACGAAGAGGATAGTAACGTCAATTTCGCTGAAGCTGCTTTATTGCTTCAAGGTTCAGT TCAAGTTTATAGCAGGAAGGTTGAGTATTTATACAACTTGGTTTTGCATGCTTTGGACTTCCTATCTCAGAAAAGGCAGCAGGATCAATCAGAGGGCACA TCTGTCCAGACCGAACAAAGTGGTTCCCGTGCAGTTTCTGATGAAGAAAATGATCAATTTTGGGTCTCAGATGATGTCCCAGTGGAAGCAAGGAATTGCT TAGATGCTTCAACCAGCAAAGATGCTTCTTTCTATCACTTTGTGAAACCACCAGCAAATCTTGTTGTTCTTGAAGGCGATTGCTTAGATACCAGTGGTGA TGGTGGGGAATTAGAGTCATACCTGTTAGCCACCAATGATCTTTACCAAGATTTTATTCTCTTAGACCCATGTGATGCCCTAGCCATAAATGATTTTTTG AAAGCAGATGGTACTGGAAGGGCACAAAATGGTCCTTACAGGGGCAGCTCAATACGTAAGACCTTTCAGTCCCCAACAAGGTGTTCTGGAGGAACTGCTA ACAAGCCTTCTCTTGGAAAGAATCGGGATGCCAATCCCATGCCATCCCCTGTTGCTGGTTGCAGTTTTGGAGTTAATGATTGTAAGATCAGGCCTGACCC TCGTGTCCATGATAATTTTGACGAGAATCCTGGATTTGATATGGAAGACAGATATTCAGATCCTGAGAATGCAGAAGATTCAGATGACAATGATGATCCC TGGAAGCCTTTGAACCCCCATGAACCTGGGAACTTAAAAGTGAAAACTTTTAAGAAAGTAAAAGATTTCAGAAGGAATGGGCTAAAATCTGCTGAGAAGA CCTCTATAACTGCTCTGTTTCCACTTGCAAGGATGCATGGTACTATTAGTCCAGATCTTGCCAAAATATGGGAAGCACAGCAAAACAAAATTGGAAAACA TGGGAACACACAATCTCCTACATTATATGAAAAGCTGAGGCAATCTCTTACTAATGAAGGGCATAATATTCCTGATACTTATGGTAACTCTGGGAATGAC AATGAAGACAATGCATATGACACTGGGATCCCTGATTTCGGGCAGCCTGATGAAGAGATTTCAGAATGCATGAATGAAGATTCACCCCCCCCTCTACATG AAAAGCATGATGATGGCGGGACTCACTTTGACACCTATAAAGATTTTGGACATGGAGATCAAAGATCTCAAGCAAGCCTGGAAGATCTATGTCGCTCTCA CCTTGATGCTCTGCTCGCCAATATAGCTGAAACTGAGAAGCAAACTGAACTGGCTGCTCGGGTTTCATCATGGAAACTGAAAATTGAGCAAAACTTGGAA GAACAAGACTCGCATCCGCCATTTGACATTCATGCCTATGGTGAAAGGATTGTTGACAAACTCTCTCTTGAAACAGACAGTAAAAAATATGTCATGGCCT TTACAGATGTTGTGAAGGGCCAGGAAAAACATGATGTGGCTCGAACCTTCTCCGCACTTCTTCAGCTGGTCAACAATGGAGAAGTTGATTTTGATAGGAG TCAAGCCAATACCGAGTCATTCTGTTACACGGCCGTCAATCCTTTCCACGTCCGGCTCCTCAGTCATAAAAAAGAACAGGAAGGAAGACAATTTCAACTG TCAAAAAAGAGAGTTAAATCACCAATAAGAAAAGGAGGTCCGAAGCTTGGGAAGAATGGTAACACAAGGTGCACACCTGAAGGTAAGAAGAGGAGAAGAT CTCGAGTTGTTGAGCCAGTTGACTTACATTCAGCAGGGTGA
AA sequence Show only first row Show all	>Potri.010G010480.1 pacid=42799273 polypeptide=Potri.010G010480.1.p locus=Potri.010G010480 ID=Potri.010G010480.1.v4.1 annot-version=v4.1 MINNNKEEASKYHTVQAERDLEANWEVDLSKKLEDYLLKICSGEIAGNEEDSNVNFAEAALLLQGSVQVYSRKVEYLYNLVLHALDFLSQKRQQDQSEGT SVQTEQSGSRAVSDEENDQFWVSDDVPVEARNCLDASTSKDASFYHFVKPPANLVVLEGDCLDTSGDGGELESYLLATNDLYQDFILLDPCDALAINDFL KADGTGRAQNGPYRGSSIRKTFQSPTRCSGGTANKPSLGKNRDANPMPSPVAGCSFGVNDCKIRPDPRVHDNFDENPGFDMEDRYSDPENAEDSDDNDDP WKPLNPHEPGNLKVKTFKKVKDFRRNGLKSAEKTSITALFPLARMHGTISPDLAKIWEAQQNKIGKHGNTQSPTLYEKLRQSLTNEGHNIPDTYGNSGND NEDNAYDTGIPDFGQPDEEISECMNEDSPPPLHEKHDDGGTHFDTYKDFGHGDQRSQASLEDLCRSHLDALLANIAETEKQTELAARVSSWKLKIEQNLE EQDSHPPFDIHAYGERIVDKLSLETDSKKYVMAFTDVVKGQEKHDVARTFSALLQLVNNGEVDFDRSQANTESFCYTAVNPFHVRLLSHKKEQEGRQFQL SKKRVKSPIRKGGPKLGKNGNTRCTPEGKKRRRSRVVEPVDLHSAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.010G010480 [exp]	0	1
AT5G23910			ATP binding microtubule motor ...		Potri.015G146000 [exp]	7.14	0.6746
AT3G17340			ARM repeat superfamily protein...		Potri.010G152700 [exp]	7.68	0.7057
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	13.11	0.6906
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	21.02	0.6540	CHR932
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.007G026700 [exp]	24.28	0.6703	CHR904,SOM1.2
AT3G17030			Nucleic acid-binding proteins ...		Potri.010G144400 [exp]	28.46	0.6650
AT1G16220			Protein phosphatase 2C family ...		Potri.004G066200 [exp]	31.17	0.6712
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	34.05	0.6593
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.016G129700 [exp]	34.69	0.6414
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	35.11	0.6586

Compare expression of checked genes

Potri.010G010480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.