Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16720 202 / 1e-63 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G15975 129 / 6e-36 RING/U-box superfamily protein (.1) AT3G62690 129 / 1e-35 ATL5 AtL5 (.1) AT2G47560 122 / 2e-33 RING/U-box superfamily protein (.1) AT1G72310 106 / 1e-26 ATL3 RING/U-box superfamily protein (.1) AT1G53820 101 / 6e-25 RING/U-box superfamily protein (.1) AT5G05810 98 / 3e-23 ATL43 RING/U-box superfamily protein (.1) AT2G42360 95 / 6e-23 RING/U-box superfamily protein (.1) AT5G05280 93 / 8e-23 RING/U-box superfamily protein (.1) AT4G40070 95 / 3e-22 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219200 [exp] 427 / 4e-152 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.009G073900 [exp] 117 / 3e-31 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.003G073300 [exp] 116 / 1e-30 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.001G162000 [exp] 115 / 2e-30 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.001G279200 [exp] 108 / 1e-27 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.019G091400 [exp] 104 / 2e-26 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 99 / 2e-23 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 95 / 5e-23 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 96 / 3e-22 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006493 [exp] 246 / 1e-80 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10037490 [exp] 235 / 9e-75 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10002194 [exp] 104 / 2e-26 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10012745 [exp] 97 / 4e-23 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10004460 [exp] 95 / 5e-22 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 94 / 7e-22 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10023617 [exp] 93 / 2e-21 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10000333 [exp] 93 / 4e-21 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10015167 [exp] 92 / 4e-21 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029037 [exp] 88 / 7e-21 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G010500.1 pacid=42799293 polypeptide=Potri.010G010500.1.p locus=Potri.010G010500 ID=Potri.010G010500.1.v4.1 annot-version=v4.1 ATGGACTCGGACTTGGGAGATCCACCAAAGGAATATAGAGAAGGCTTTGCATTAAGTGGCAAGATAATGCTAAGTGCTGTTGTTATTCTTTTCCTTGTTA TCATTTTAATGGTTTGTCTCCACTTTTACGCTCGCTGGTACCTCATCCGCGCACGGCGGCGCCATATCCGCCATGCCCGCAACCGCCGTAACCATCTTGT ATTCTACGTCGACTCCGCCCACAACCCTACCATTGTCACAACTCAAGTCACACGTGGCCTTGAAGAGACCGTCTTAAAATCGCTTCCTGTTTTTGTGTAT TCAGAAAAAACCCACCAAGATTCGATGGAGTGTGCGGTTTGTTTATCCGAGTTTCAAGAGAACGAAACGGGTCGGACCTTGCCTAAATGTAATCATAGCT TCCACATCGAGTGTATTGATATGTGGTTTCTTTCTCACTCCACGTGCCCTCTCTGTCGCTCTCCGGTTGAGCCGGTGACGGAAAACCCGGTTCAAGATGG TCCCGGTTACGAGATTTCGGTACCGGGTTCGGGTTCCAGTTCGGGTACCATGTGTCAGCATGAGGAGGGTCGTGTGGGTTCGGCTTCTACGTCGTCGTTT AATGACAGAAGGAAACAGATGGAGCTTATCGGGGTGACCATCGAAGTGCCTAGGAGAAATGGGAATTTTGAGGATGAGTCAAACACTGAGTCACCATCAG CGAGTCACGCGTTTAGATCGCCAATGAGTCGGATGCTGTCGTTTAAGAGGATGCTAAGTAGGGAAAGAAGAGGTACTGCGTCTCCTAACGTGGCTACCTC TGTGAGTTGCGGTGGTGAGTCAGGGACGACTGAGATGGATGTTGAACGAGGGCAGGATGAGTCGATGCCTCAGCAAACTCGGTGCTAA
AA sequence Show only first row Show all	>Potri.010G010500.1 pacid=42799293 polypeptide=Potri.010G010500.1.p locus=Potri.010G010500 ID=Potri.010G010500.1.v4.1 annot-version=v4.1 MDSDLGDPPKEYREGFALSGKIMLSAVVILFLVIILMVCLHFYARWYLIRARRRHIRHARNRRNHLVFYVDSAHNPTIVTTQVTRGLEETVLKSLPVFVY SEKTHQDSMECAVCLSEFQENETGRTLPKCNHSFHIECIDMWFLSHSTCPLCRSPVEPVTENPVQDGPGYEISVPGSGSSSGTMCQHEEGRVGSASTSSF NDRRKQMELIGVTIEVPRRNGNFEDESNTESPSASHAFRSPMSRMLSFKRMLSRERRGTASPNVATSVSCGGESGTTEMDVERGQDESMPQQTRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.010G010500 [exp]	0	1
AT2G33580			Protein kinase superfamily pro...		Potri.005G259600 [exp]	1.00	0.8505
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.006G087800 [exp]	2.44	0.8128
AT3G52460			hydroxyproline-rich glycoprote...		Potri.009G020000 [exp]	4.24	0.7926
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Potri.006G232100 [exp]	12.96	0.7392
					Potri.018G078801 [exp]	14.42	0.8133
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258000 [exp]	20.78	0.7607
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	21.44	0.8077	CBP60.12
AT4G17490	AP2_ERF	ERF-6-6, ATERF6	ethylene responsive element bi...		Potri.001G154200 [exp]	21.90	0.7756	Pt-ERF5.2,ERF4
AT2G19710			Regulator of Vps4 activity in ...		Potri.006G149800 [exp]	23.36	0.7964
AT4G30780			unknown protein		Potri.018G102800 [exp]	23.74	0.6812

Compare expression of checked genes

Potri.010G010500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.