Plant FIBer expression Database

Potri.010G010600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06840 132 / 4e-39 unknown protein
AT5G49170 121 / 9e-35 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G219500
[exp]
239 / 5e-81 AT3G06840 136 / 1e-40 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036097
[exp]
100 / 1e-26 AT5G49170 97 / 2e-25 unknown protein
Lus10022872
[exp]
95 / 8e-25 AT5G49170 97 / 6e-26 unknown protein
Lus10024954
[exp]
90 / 1e-22 AT5G49170 96 / 3e-25 unknown protein
Lus10006495
[exp]
87 / 1e-21 AT5G49170 118 / 9e-34 unknown protein
Lus10006494
[exp]
66 / 2e-13 AT3G06840 102 / 1e-27 unknown protein
Lus10026782
[exp]
50 / 2e-08 ND 42 / 4e-06
PFAM info
Representative CDS sequence
>Potri.010G010600.1 pacid=42797643 polypeptide=Potri.010G010600.1.p locus=Potri.010G010600 ID=Potri.010G010600.1.v4.1 annot-version=v4.1
ATGTCAAACAAGTCCCCAATTTTTCCCATGCCAGAACCTCAACACTTCAGCGACTATGGCTTTGACCCACAAATTGATTACTTTCAGTTGTCGGAGGAAG
CAAGAAATCGCAAGAGAAAGACAATAACATCAAGGTTTTCCGTTGACTCCTTACACTTCAAGCTCCGAAAGCCCATTTCAAATGAAGAGTCTGCAAGTAG
AAAGGTCCACAAAGCCAACAAGAAGAAGAAGAAATGGTGGAGAAATGCAATGTTGTTCTTTAAGTGGAAGTGTATCCACAGTAATCACAAAGATTACTAT
CTTGATCATGAAGAAGATGTGCATGAAGCAAGGGCTAGAGCTTTCAGTGCTTCAATCTCAGGATCTGTTTATTTAATTGATAGTTTAAGTGGGTCAAGTA
CTCCTTCCAGGTCCACTAGCAGACCGTCTTCAGGGCCTCTAGCTGGAACCTTGACTCCTGCAAGAAAAGGTGATATGGAGATACCTTATTTGAGCCTGAG
GGAGCTTAACATGGAGCAGCAACAGCAGAGGAGTTCTACTTCTGCTAAGCCAATATATTTGGTCACTTAA
AA sequence
>Potri.010G010600.1 pacid=42797643 polypeptide=Potri.010G010600.1.p locus=Potri.010G010600 ID=Potri.010G010600.1.v4.1 annot-version=v4.1
MSNKSPIFPMPEPQHFSDYGFDPQIDYFQLSEEARNRKRKTITSRFSVDSLHFKLRKPISNEESASRKVHKANKKKKKWWRNAMLFFKWKCIHSNHKDYY
LDHEEDVHEARARAFSASISGSVYLIDSLSGSSTPSRSTSRPSSGPLAGTLTPARKGDMEIPYLSLRELNMEQQQQRSSTSAKPIYLVT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06840 unknown protein Potri.010G010600
[exp]
0 1
AT1G26760 SDG35, ATXR1 SET domain protein 35 (.1) Potri.008G089500
[exp]
4.35 0.9567 SDG942
AT4G31840 AtENODL15 early nodulin-like protein 15 ... Potri.006G184100
[exp]
6.00 0.9483
AT5G42700 B3 AP2/B3-like transcriptional fa... Potri.014G031700
[exp]
11.61 0.9422
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Potri.013G048900
[exp]
13.85 0.9383 Pt-CDC20.4
AT4G38070 bHLH basic helix-loop-helix (bHLH) ... Potri.011G131500
[exp]
14.14 0.9355
AT3G15550 unknown protein Potri.001G175500
[exp]
14.14 0.9450
AT1G20180 Protein of unknown function (D... Potri.002G018200
[exp]
15.55 0.8775
AT5G56120 unknown protein Potri.001G470800
[exp]
16.43 0.9342
AT2G07050 CAS1 cycloartenol synthase 1 (.1) Potri.018G148800
[exp]
18.43 0.8598 Pt-CAS.2
AT3G23670 PAKRP1L ,KINESI... phragmoplast-associated kinesi... Potri.002G235500
[exp]
20.14 0.9306 PAKRP1.2

Potri.010G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.