Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 396 / 6e-139 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 375 / 2e-130 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 371 / 3e-129 ATSEH soluble epoxide hydrolase (.1) AT2G26750 362 / 1e-125 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 345 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 273 / 2e-90 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 49 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010800 [exp] 526 / 0 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 521 / 0 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 409 / 4e-144 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 402 / 2e-141 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 395 / 6e-139 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 362 / 4e-125 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 298 / 3e-100 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 219 / 3e-71 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 174 / 5e-52 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038649 [exp] 422 / 5e-149 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 395 / 2e-138 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 394 / 4e-138 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 389 / 4e-136 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 363 / 6e-126 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 339 / 1e-116 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 337 / 1e-115 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 315 / 4e-107 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 310 / 2e-105 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 310 / 5e-105 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G010700.1 pacid=42800081 polypeptide=Potri.010G010700.1.p locus=Potri.010G010700 ID=Potri.010G010700.1.v4.1 annot-version=v4.1 ATGGACTCCATAGAACACAGAACCATTCATGCTAATGGCATTACCATGCATGTAGCAATCAAAGGCTCAGAGAATGCTCCGGTTATTCTATTTCTCCATG GATTCCCCGAATCATGGTACTCCTGGAGATACCAGATTTTAGCTCTATCCTCACTTGGCTATAGATCTGTGGCACCTGACTTGAGAGGGTATGGTGACAC AGACGCCCCAGCTGAGATTACAAGCTACACATGCTTCCATTTGGTTGGTGATTTAATTGGGTTGCTTGATGTTGTGGCACCGAATGAAGATAAAGTTTTT GTTGTGGCACATGATTGGGGTGCTATAATAGCTTGGTATATGTGTTTGTTTAGACCAGATAGAGTTAAAGCTCTGGTTAATACCAGTGTTTTGTTTATTC CGAGGAATCCTAAGAGGAAATTTGTTGAGACTTTGAGGGCTCTTTATGGTGATGATTACTACATGTGCAGATTTCAGGAGCCTGGAGTGATTGAAGCAGA GTATGCAGAGAGAGGCACGGAGAGAGTTCTGAAGGAATTGTTAACGCACCGAGTTGCAGGACCTCTTTTTTTACCTAAAGGTAAAGGTTTAAATGGAGCC CCGCTGGATGCTCCAATTGTCTTGCCCTCTTGGTTGTCTGAGGAAGATTTCAAGTACTACACCAACAAATTTGAGCAGAAAGGCTTTACTGGAGGATTAA ACTATTATCGGAATCTGGATAGGAACTGGGAGCTCACAGCACCATGGACAGGGGCTCAAGTGACAGTACCTGTCAAGTTTATTATTGGTGATGAGGACCT GACCTATAATTCTCTTGGTGGGAAGGATTATATAGACTCAGGCGGGTTCAAGAGAGACGTTCCATTTTTAGAGGAACTAGTCGTAATGGAAGGAGTAGGG CATTTCCTCAATCAAGAGAAGGCGGATGAGATCAATAAGCACATTTATGATTTCTTTCAAAAGTTCTAG
AA sequence Show only first row Show all	>Potri.010G010700.1 pacid=42800081 polypeptide=Potri.010G010700.1.p locus=Potri.010G010700 ID=Potri.010G010700.1.v4.1 annot-version=v4.1 MDSIEHRTIHANGITMHVAIKGSENAPVILFLHGFPESWYSWRYQILALSSLGYRSVAPDLRGYGDTDAPAEITSYTCFHLVGDLIGLLDVVAPNEDKVF VVAHDWGAIIAWYMCLFRPDRVKALVNTSVLFIPRNPKRKFVETLRALYGDDYYMCRFQEPGVIEAEYAERGTERVLKELLTHRVAGPLFLPKGKGLNGA PLDAPIVLPSWLSEEDFKYYTNKFEQKGFTGGLNYYRNLDRNWELTAPWTGAQVTVPVKFIIGDEDLTYNSLGGKDYIDSGGFKRDVPFLEELVVMEGVG HFLNQEKADEINKHIYDFFQKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	2.44	0.9709
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	2.44	0.9718
AT5G58750			NAD(P)-binding Rossmann-fold s...		Potri.009G045700 [exp]	3.60	0.9552
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G002900 [exp]	4.00	0.9676
AT5G01830			ARM repeat superfamily protein...		Potri.006G107600 [exp]	5.29	0.9550
AT2G31090			unknown protein		Potri.011G063900 [exp]	5.47	0.9555
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.006G062500 [exp]	6.32	0.9633
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G142800 [exp]	6.32	0.9667
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	7.34	0.9645	NAC021
AT1G24440			RING/U-box superfamily protein...		Potri.012G093300 [exp]	9.00	0.9425

Compare expression of checked genes

Potri.010G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.