Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15960 412 / 2e-144 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 397 / 2e-139 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 375 / 1e-130 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 372 / 2e-129 ATSEH soluble epoxide hydrolase (.1) AT2G26750 362 / 1e-125 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 351 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 276 / 8e-92 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 56 / 1e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 53 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010800 [exp] 617 / 0 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 517 / 0 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 399 / 4e-140 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 393 / 8e-138 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 386 / 5e-135 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 362 / 6e-125 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 297 / 7e-100 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 217 / 3e-70 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 172 / 1e-51 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038649 [exp] 446 / 1e-158 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 396 / 5e-139 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 357 / 2e-123 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 355 / 1e-122 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 348 / 4e-120 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 347 / 1e-119 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 323 / 2e-110 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 322 / 1e-109 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 313 / 5e-106 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10009859 [exp] 302 / 4e-103 AT4G02340 349 / 6e-122 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G010900.1 pacid=42799542 polypeptide=Potri.010G010900.1.p locus=Potri.010G010900 ID=Potri.010G010900.1.v4.1 annot-version=v4.1 ATGGCCTCCTCCATAGAACACAGAACCATTAATGTCAATGGCATTAATATTCATGTAGCAATCAAAGGTCCAGAGAATGCCCCAGTTATTCTCTTCATCC ATGGATTCCCTCAACTATGGTATTCCTGGAGACACCAGATTGAGGCTCTATCCTCACTTGGCTACAGAGCTGTGGCACCGGACTTGAGAGGGTATGGTGA CACAGATGCGCCAGCTGAGGTTACAAGTTACACCGTTCTCCATGTGGTTGGTGATTTGATTGGGTTGCTTGATGTTGTTGCTCCGAATCAAGAGAGTGTT TTTGTTGTGGGACATGATTGGGGTGCTTTGATGGCTTGGCATTTGGCTTTGTTTAGACCAGATAGAGTTAAAGCTTTGGTTAACTTGAGTGTTTTGTTTA ATCCAAGGAATCCCAGTAGGAAAGTTATTGCGACTTTGAAGGCTGTTTATGGTGACGATTATTATATTATCAGATTCCAGGAGCCTGGAGAGATTGAAGC TGAGTTTGCAGAGATAGGTACAGAGAAAGTTCTCAAGGAATTCTTAACCTACCGCACTCCAGCTCCTCTCTTTTTACCTAAAGGCCAAGGGTTTAATGGA AAGCCTCTGGACACTCCAGTTGTCTTACCCTCTTGGTTGTCTGAAGAAGATGTCAAGTACTACACCAGCAAGTATGAGCAGAAAGGCTTTACTGGAGGAT TGAACTATTACCGAAATCTTGACCGGAACTGGGAACTTACCGCACCATGGACTGGAGCTCAAATAAAAGTTCCAGTCAAGTTTATCGTGGGTGATCAGGA CCTCACCTATAATTCTCTCGGTGCCAAGGATCATATAGCCAAGGGCGGGTTCAAAAGAGACGTTCCATTTCTACATGACCTAGTTGTAATGGAAGGTGTG GGTCATTTTATCAATGAAGAGAAACCTGAAGAGATCAGTAAGCACATTTACGACTTCTTTCAAAAGCTCTAG
AA sequence Show only first row Show all	>Potri.010G010900.1 pacid=42799542 polypeptide=Potri.010G010900.1.p locus=Potri.010G010900 ID=Potri.010G010900.1.v4.1 annot-version=v4.1 MASSIEHRTINVNGINIHVAIKGPENAPVILFIHGFPQLWYSWRHQIEALSSLGYRAVAPDLRGYGDTDAPAEVTSYTVLHVVGDLIGLLDVVAPNQESV FVVGHDWGALMAWHLALFRPDRVKALVNLSVLFNPRNPSRKVIATLKAVYGDDYYIIRFQEPGEIEAEFAEIGTEKVLKEFLTYRTPAPLFLPKGQGFNG KPLDTPVVLPSWLSEEDVKYYTSKYEQKGFTGGLNYYRNLDRNWELTAPWTGAQIKVPVKFIVGDQDLTYNSLGAKDHIAKGGFKRDVPFLHDLVVMEGV GHFINEEKPEEISKHIYDFFQKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010900 [exp]	0	1
AT3G62580			Late embryogenesis abundant pr...		Potri.002G197800 [exp]	1.00	0.8328
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	7.93	0.8112
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	10.39	0.8220
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G035700 [exp]	30.78	0.8067
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.013G039700 [exp]	36.87	0.8060
AT1G78172			unknown protein		Potri.002G096200 [exp]	40.79	0.7764
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	45.27	0.7672
AT3G18050			unknown protein		Potri.015G040900 [exp]	46.82	0.7705
AT1G04630		MEE4	maternal effect embryo arrest ...		Potri.001G054500 [exp]	52.24	0.7474
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214700 [exp]	55.42	0.7791

Compare expression of checked genes

Potri.010G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.