Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15940 369 / 2e-130 Fumarylacetoacetate (FAA) hydrolase family (.1) AT3G16700 353 / 3e-124 Fumarylacetoacetate (FAA) hydrolase family (.1), Fumarylacetoacetate (FAA) hydrolase family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006496 [exp] 396 / 4e-141 AT4G15940 362 / 1e-128 Fumarylacetoacetate (FAA) hydrolase family (.1) Lus10037490 [exp] 124 / 1e-32 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0377 [poplar] [flax] FAH PF01557 [poplar] [flax] FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G011000.1 pacid=42798184 polypeptide=Potri.010G011000.1.p locus=Potri.010G011000 ID=Potri.010G011000.1.v4.1 annot-version=v4.1 ATGTCGGGTCTAGAGAGTTACCTTTTGACTTCTTCTTCCCTTTCATTTCCTTTCTCCAACAATAAAAGGTCGCAAGTCCAGTGTACTCCTCCAAGACGAT CGCCGTTTGACATTGCTCCGATAAAGAGAAGACCGATCTTGATCGTAATGGCATCACCGTCAGCAGGCATACAAAAGCTACTTCATGTAGGAACCAAGAT CGTTGCTGTTGGCCGTAACTACGCTGCTCACGCCAAAGAACTAGGCAACGCCGTCCCTAAGGAACCGGTGTTGTTTATGAAACCGACGTCATCTTATTTG GAAAACGGAGGTACGATCGAGATTCCACAACCGTTGGAGTCGTTGCATCATGAAGTCGAGCTTGCTGTTGTTATTGGCCAGAAAGCTCGTGATGTGCCTG AATCAACTGCCATGGATTATGTTGGAGGGTATGCGCTTGCATTGGATATGACTGCTAGGGAAATACAAGCTACTGCTAAGTCTGCAGGGCTCCCGTGGAC TGTGGCTAAAGGGCAGGACACATTCACACCTATCAGTTCTGTTCTTTCCAAGTCAAATGTGCTTGACCCTAACAACTTGGAACTATGGTTAAAGGTAGAT GGAGAAATACGCCAGAAAGGTTCTACCAAAGATATGATCTTTAAAATCCCATTTCTCATTAGCCACATCAGTTCTATCATGACACTCTTTGAAGGAGATG TTATATTAACAGGCACCCCACAAGGTGTTGGCCCTGTAAAAATAGGTCAAAAAATAACAGCTGGTATAACAGATCTTATCGATGTGCACTTCAATGTTGA GAAACGCAAAAGGCCTGGAAGTTGCTGA
AA sequence Show only first row Show all	>Potri.010G011000.1 pacid=42798184 polypeptide=Potri.010G011000.1.p locus=Potri.010G011000 ID=Potri.010G011000.1.v4.1 annot-version=v4.1 MSGLESYLLTSSSLSFPFSNNKRSQVQCTPPRRSPFDIAPIKRRPILIVMASPSAGIQKLLHVGTKIVAVGRNYAAHAKELGNAVPKEPVLFMKPTSSYL ENGGTIEIPQPLESLHHEVELAVVIGQKARDVPESTAMDYVGGYALALDMTAREIQATAKSAGLPWTVAKGQDTFTPISSVLSKSNVLDPNNLELWLKVD GEIRQKGSTKDMIFKIPFLISHISSIMTLFEGDVILTGTPQGVGPVKIGQKITAGITDLIDVHFNVEKRKRPGSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Potri.010G011000 [exp]	0	1
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.003G125800 [exp]	4.24	0.6474	ATGSTT1.2
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.002G062500 [exp]	7.00	0.7136
AT5G16940			carbon-sulfur lyases (.1.2)		Potri.017G132000 [exp]	12.48	0.6808
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Potri.003G138300 [exp]	22.69	0.6876	SEH1.1
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	22.80	0.6718
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.008G060000 [exp]	27.49	0.6971	Pt-EIF3.1
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Potri.001G424600 [exp]	28.39	0.6323
AT3G21690			MATE efflux family protein (.1...		Potri.011G002900 [exp]	36.12	0.6499
AT1G34360			translation initiation factor ...		Potri.009G137000 [exp]	38.49	0.6204
AT4G14930			Survival protein SurE-like pho...		Potri.010G088000 [exp]	44.39	0.6361

Compare expression of checked genes

Potri.010G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.