Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02790 301 / 9e-99 PGA4 polygalacturonase 4 (.1) AT4G18180 281 / 2e-91 Pectin lyase-like superfamily protein (.1) AT3G07840 277 / 8e-90 Pectin lyase-like superfamily protein (.1) AT3G07820 273 / 2e-88 Pectin lyase-like superfamily protein (.1) AT3G07830 270 / 3e-87 Pectin lyase-like superfamily protein (.1) AT5G48140 270 / 4e-87 Pectin lyase-like superfamily protein (.1) AT1G43080 262 / 5e-84 Pectin lyase-like superfamily protein (.1) AT1G43090 261 / 5e-83 Pectin lyase-like superfamily protein (.1) AT1G78400 256 / 8e-82 Pectin lyase-like superfamily protein (.1) AT2G33160 261 / 6e-81 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G007300 [exp] 547 / 0 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1) Potri.010G011100 [exp] 547 / 0 AT1G02790 295 / 1e-96 polygalacturonase 4 (.1) Potri.002G202100 [exp] 356 / 2e-120 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.002G202200 [exp] 354 / 9e-120 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.009G169100 [exp] 317 / 8e-105 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G038100 [exp] 279 / 2e-90 AT1G78400 357 / 4e-121 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 273 / 2e-88 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 273 / 2e-88 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 273 / 2e-88 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016823 [exp] 305 / 5e-103 AT1G02790 238 / 8e-77 polygalacturonase 4 (.1) Lus10003782 [exp] 303 / 1e-99 AT1G02790 323 / 4e-107 polygalacturonase 4 (.1) Lus10012489 [exp] 301 / 1e-98 AT1G02790 307 / 6e-101 polygalacturonase 4 (.1) Lus10016824 [exp] 271 / 4e-87 AT4G18180 281 / 7e-91 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 268 / 2e-86 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 254 / 6e-81 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 254 / 6e-81 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 252 / 4e-80 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 251 / 7e-80 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 249 / 3e-79 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.010G011200.1 pacid=42798405 polypeptide=Potri.010G011200.1.p locus=Potri.010G011200 ID=Potri.010G011200.1.v4.1 annot-version=v4.1 ATGGCAATGGCCATATTATTTACATGGAAATCATCGGCAAATGCCTCACTCATTTTGTGCATTATAGCGGCCTCCTTTGTTTCAAAGGCTCTGGGGCACC ACGGACGTGCCGACAGGAAAGATCCCAATGAGAAGGTGTTTAACGTGTTACGTTATGGAGCACATCCTGGAAGAGAGGATAACGCACTGTCTTTCATCCG AGCATGGAAGGCTGCATGCAATTATAGGGGAAAGGCAAGGCTACTTATCCCCAAGGGAACCTTTTTGATAGGGGCAACTATCTTTCAGGGACCATGCCAA GGTCCAGCACCCATTAAGGTTCAAATTGCAGGAACTCTGAAAGCTGTACCAGACCCTAGCATGTACGAAGAAGATTTCTGGATCTTATTTGAAAACATCA AGGGCTTGCTGGTTACTGGTACAGGCACTGTTGATGGCCAAGGCAATGCTGTCTGGAAATACAATGTCGGCGACGGCGGTGCCAAGTTCCCAAGTTCTAT AAAATTCAATCATGTAGTCAACGGGATTATAAGACAGATCACCTCTGTGAATCCCATGGGTTTCCACATATCCATCGTTCTGTCCCAGAACATCAAGGCC AAAAATCTTCGTATATTTGCCCCTTCCGACAGCCCCAACACTGACGGAATCCATATCAGCCAAACCAATCAAGTGTATGTATCAAATAGTGTCATCGGCA CTGGTGATGATTGCATTGGCATCATACGTGGATGCACCGATGTCCACATCAGAAATGTAACCTGTGGCCCTGGACACGGTATCAGTATTGGTAGCCTTGG AAAGTACCAGGATGAGGAGGATGTGAGAGGGATCACTGTGAAAAACTGCACATTGAATAACACGGACAATGGAATCAGAATAAAAACATATGGAGGATCA CCTCCAAGCCAAGCTTCGGGCATACTTTTCCAGGATATCGTCATGGTCAGAGTAAAAAACCCCATTATTATTGATCAATCTTATGGAAACAAAGAATCGG CATCAAGGGTAAGGCTCAGTGATGTTCGATACCAAAACATTAGAGGAACATCCACTTCAGTTGTTGGAGTAAACATCAAGTGCAGCAATACTGTTCCCTG TGAAAGAGTTAGCTTGTCAAACATAAATTTGAACTACGTTGGAGCAAAACAGCATAATCATGAAATCAGCTCTGTGTGCACCAATGCAAAATTAAATTAT GCTGGCTTCCAGCTCCCATCACCTTGCCGATAG
AA sequence Show only first row Show all	>Potri.010G011200.1 pacid=42798405 polypeptide=Potri.010G011200.1.p locus=Potri.010G011200 ID=Potri.010G011200.1.v4.1 annot-version=v4.1 MAMAILFTWKSSANASLILCIIAASFVSKALGHHGRADRKDPNEKVFNVLRYGAHPGREDNALSFIRAWKAACNYRGKARLLIPKGTFLIGATIFQGPCQ GPAPIKVQIAGTLKAVPDPSMYEEDFWILFENIKGLLVTGTGTVDGQGNAVWKYNVGDGGAKFPSSIKFNHVVNGIIRQITSVNPMGFHISIVLSQNIKA KNLRIFAPSDSPNTDGIHISQTNQVYVSNSVIGTGDDCIGIIRGCTDVHIRNVTCGPGHGISIGSLGKYQDEEDVRGITVKNCTLNNTDNGIRIKTYGGS PPSQASGILFQDIVMVRVKNPIIIDQSYGNKESASRVRLSDVRYQNIRGTSTSVVGVNIKCSNTVPCERVSLSNINLNYVGAKQHNHEISSVCTNAKLNY AGFQLPSPCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.010G011200 [exp]	0	1
					Potri.001G276804 [exp]	5.38	1.0000
					Potri.001G330250 [exp]	7.61	1.0000
					Potri.001G466250 [exp]	9.32	1.0000
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160200 [exp]	10.77	1.0000
					Potri.005G134725 [exp]	12.04	1.0000
					Potri.005G145702 [exp]	13.19	1.0000
					Potri.006G229001 [exp]	14.24	1.0000
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.007G114001 [exp]	15.23	1.0000
					Potri.008G169851 [exp]	16.15	1.0000
AT5G05800			unknown protein		Potri.008G209401 [exp]	17.02	1.0000

Compare expression of checked genes

Potri.010G011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.