Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49130 611 / 0 MATE efflux family protein (.1) AT1G71870 437 / 9e-150 MATE efflux family protein (.1) AT4G29140 418 / 9e-142 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G19700 402 / 1e-135 MATE efflux family protein (.1) AT5G52050 389 / 8e-131 MATE efflux family protein (.1) AT1G58340 377 / 1e-125 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G23030 360 / 1e-119 MATE efflux family protein (.1) AT2G38510 355 / 8e-118 MATE efflux family protein (.1) AT4G22790 237 / 3e-72 MATE efflux family protein (.1) AT1G15170 218 / 4e-65 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115600 [exp] 441 / 2e-151 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 436 / 3e-149 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 408 / 1e-137 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.003G121400 [exp] 403 / 4e-136 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 401 / 4e-135 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 399 / 3e-134 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 369 / 7e-123 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 362 / 9e-120 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 259 / 1e-80 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009788 [exp] 661 / 0 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 422 / 5e-143 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10017836 [exp] 390 / 3e-131 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 392 / 5e-131 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 371 / 2e-123 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 365 / 4e-121 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 320 / 5e-103 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 307 / 5e-100 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 231 / 1e-69 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 228 / 1e-68 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.010G011400.1 pacid=42798494 polypeptide=Potri.010G011400.1.p locus=Potri.010G011400 ID=Potri.010G011400.1.v4.1 annot-version=v4.1 ATGGTTACAGAAGAGAAATCCCACAAGTACCCAACAATGCCAGAGGTGGTGGAGGAGCTAAAAAGAATGACAGACATAGGCTTCCCTATAGCAGCTTTGA GCTTGGTGGGGTATCTCAAAAACATGATCTTAGTAGTCTGCATGGGAAGACTAGGAAGCTTGGAGCTCGCAGGAGGTGCCTTAGCTATTGGATTCACCAA CATCAGTGGCTACTCAGTTCTTTCCGGCCTAGCGATGGGGATGGAGCCTCTATGTAGTCAAGCATTTGGTTCGAGAAATCTATTAGTAGCATCTCATACT CTAAGAAGAACAATTCTTATGTTACTACTTGCTTCAATACCTATTGGCTTGTTATGGGTCAATCTTGAACCCCTCTTGCTTAGCCTCCATCAAGATCCTG ACATAACCAGAATCGCAAGTTTATACTGTCGATTTTCCATTCCTGATCTTATTGCTAATAGCCTCCTGCACCCTCTACGAATTTACTTGCGCAGTAAAGG AACTACATGGCCGTTAATGTGGTGCACCCTGGTCTCCGTTGTTCTGCATGTTCCTGTCACCATATTTCTAGCCTTCACTCTTTGTCTTGGAGTCCCTGGA ATTGCAATTTCTACTTTTATCACTAATTTCAACACCCTCTTGTTCCTCGTATGCTACATGTATTTATTCAGTCGGGCCACTGAGGAGGAGCCCTCGTCCA CACCCCTAATTAGACAACAACCATTTCTATCATCTCCTTCTACTTCACTAAGAAAGGAATGGGGAATCCTACTCCGGCTTGCCATCCCAAGTTGCATAGC TGTTTGTTTAGAGTGGTGGTGGTATGAGTTCATGACAATTCTAGCTGGTTACTTGCACAACCCTCAAGCCGCTCTAGCAACATCAGCTATTATAATTCAG ACCACATCCCTAATGTACACGTTGCCAACATCACTGAGTGCATCGGTGTCGACTCGGGTGGGCAACGAGCTTGGAGCAGGCAGGCCACAGAAAGCTCGTT TGGCCACGGTGGTTGCAATAGGCTTAGCCTTATTAAGCTCATTGCTTGGTTTGCTATGGACCATCCTAGGGAGAGAAGCATGGGGGAAAGTTTTTACAAA AGATGATGAGGTTCTCGAGCTAACTATGGTTGTACTGCCCATAATTGGATTATGTGAGCTTGCAAATTGTCCACAAACGACAAGCTGTGGAATTTTAAGA GGGAGTGCTAGGCCCGGCATCGGGGCAGGGATTAACTTTTACTCCTTTTACATGGTGGGTGCACCTGTGGCCATAGGCCTAGCCTTTGTTTGGAAACTAG GGTTTGTGGGTCTATGTTATGGTCTTCTAGCGGCTCAAGTTGTATGTGTGGTCTCAATTTTAACAGTAGTATACAAGACAGATTGGGATAGAGAATCTTT AAAGGCCAAAGAACTGGTTGGCAAGACTGGTGCCTTGGCACATGAACATGCAGACCATATAGCCAAATGTGAAGAAGGAGAAGGGCTAAGTTTCGGGTGA
AA sequence Show only first row Show all	>Potri.010G011400.1 pacid=42798494 polypeptide=Potri.010G011400.1.p locus=Potri.010G011400 ID=Potri.010G011400.1.v4.1 annot-version=v4.1 MVTEEKSHKYPTMPEVVEELKRMTDIGFPIAALSLVGYLKNMILVVCMGRLGSLELAGGALAIGFTNISGYSVLSGLAMGMEPLCSQAFGSRNLLVASHT LRRTILMLLLASIPIGLLWVNLEPLLLSLHQDPDITRIASLYCRFSIPDLIANSLLHPLRIYLRSKGTTWPLMWCTLVSVVLHVPVTIFLAFTLCLGVPG IAISTFITNFNTLLFLVCYMYLFSRATEEEPSSTPLIRQQPFLSSPSTSLRKEWGILLRLAIPSCIAVCLEWWWYEFMTILAGYLHNPQAALATSAIIIQ TTSLMYTLPTSLSASVSTRVGNELGAGRPQKARLATVVAIGLALLSSLLGLLWTILGREAWGKVFTKDDEVLELTMVVLPIIGLCELANCPQTTSCGILR GSARPGIGAGINFYSFYMVGAPVAIGLAFVWKLGFVGLCYGLLAAQVVCVVSILTVVYKTDWDRESLKAKELVGKTGALAHEHADHIAKCEEGEGLSFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49130			MATE efflux family protein (.1...		Potri.010G011400 [exp]	0	1
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	6.78	0.8813
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	11.13	0.8678
AT2G24960			unknown protein		Potri.004G172900 [exp]	15.19	0.8485
AT4G39730			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G107100 [exp]	17.23	0.8641
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	24.33	0.8623
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G056000 [exp]	37.10	0.8555	Pt-GNS2.1
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	37.22	0.8590
AT5G02420			unknown protein		Potri.009G030200 [exp]	37.94	0.8371
AT4G02010			Protein kinase superfamily pro...		Potri.002G194850 [exp]	40.29	0.8568
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	40.47	0.8591

Compare expression of checked genes

Potri.010G011400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.