Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49120 98 / 1e-26 Protein of unknown function (DUF581) (.1) AT1G22160 66 / 4e-14 Protein of unknown function (DUF581) (.1) AT5G47060 62 / 1e-12 Protein of unknown function (DUF581) (.1) AT4G39795 60 / 2e-12 Protein of unknown function (DUF581) (.1) AT1G78020 61 / 3e-12 Protein of unknown function (DUF581) (.1) AT4G17670 56 / 2e-10 Protein of unknown function (DUF581) (.1) AT5G65040 55 / 2e-10 Protein of unknown function (DUF581) (.1) AT1G53903 55 / 2e-10 Protein of unknown function (DUF581) (.1) AT1G53885 55 / 2e-10 Protein of unknown function (DUF581) (.1) AT1G74940 56 / 3e-10 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219800 [exp] 171 / 1e-55 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 75 / 6e-18 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 69 / 1e-15 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.003G071900 [exp] 63 / 4e-13 AT1G53903 108 / 4e-31 Protein of unknown function (DUF581) (.1) Potri.001G163400 [exp] 62 / 8e-13 AT1G53903 113 / 5e-33 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 64 / 9e-13 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 64 / 1e-12 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 61 / 8e-12 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 60 / 1e-11 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006499 [exp] 87 / 2e-22 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 81 / 6e-20 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10003939 [exp] 60 / 1e-11 AT1G53903 60 / 1e-11 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 61 / 2e-11 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 58 / 1e-10 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 56 / 2e-10 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 56 / 3e-10 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 56 / 5e-10 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 54 / 7e-10 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 55 / 2e-09 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.010G011700.2 pacid=42797870 polypeptide=Potri.010G011700.2.p locus=Potri.010G011700 ID=Potri.010G011700.2.v4.1 annot-version=v4.1 ATGGTGGGTTTAAGCATAGTTTTGGAGACCCCAAAGAGTGGTAGTGCCCTGCAAGTTATCAACAAAGTTACCATGATGATCAACAACAAACCTACTTCCC CTCCTGGTTTTTCTTCTTCTAGAAATCATTCTCCACGCTTCTCTTTTCCAGTCCCCACTTTTCTTGATCAGTGTTTCTTTTGTGGACAGAAACTCTTGCC TGGCAAGGATATCTACATGTACAAAGGAGACAGGGGGTTTTGCAGTGTGGAGTGCAGGTGCAGGCAGATATTTTTGGATGAAGAAGAGACATTGAGGAAA GAGAACTGTTCATTTGCTGCAATGAAACCAACTGGTGCTTCTGCTTCTGCTTCTGCTAAAAGTACTTCTTCTACTGCTGCTTCCCGTCACCGCAAAGGCA CAAGGAACCGAGAGGGTGGTTTTGCATACTGA
AA sequence Show only first row Show all	>Potri.010G011700.2 pacid=42797870 polypeptide=Potri.010G011700.2.p locus=Potri.010G011700 ID=Potri.010G011700.2.v4.1 annot-version=v4.1 MVGLSIVLETPKSGSALQVINKVTMMINNKPTSPPGFSSSRNHSPRFSFPVPTFLDQCFFCGQKLLPGKDIYMYKGDRGFCSVECRCRQIFLDEEETLRK ENCSFAAMKPTGASASASAKSTSSTAASRHRKGTRNREGGFAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49120			Protein of unknown function (D...		Potri.010G011700 [exp]	0	1
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G138202 [exp]	2.00	0.8574
AT2G31090			unknown protein		Potri.019G090500 [exp]	2.44	0.8217
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	3.00	0.8438	Pt-ATHB.4
AT5G15790			RING/U-box superfamily protein...		Potri.004G114800 [exp]	3.60	0.8017
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G145700 [exp]	4.69	0.8489	Pt-ARA1.1
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.003G167900 [exp]	4.69	0.7671
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.009G048700 [exp]	4.89	0.8140	Pt-SCL3.1
AT5G41761			unknown protein		Potri.002G167900 [exp]	6.32	0.8382
AT4G12070			unknown protein		Potri.001G017000 [exp]	9.48	0.7449
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.009G096000 [exp]	10.24	0.7293

Compare expression of checked genes

Potri.010G011700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.