Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49110 1150 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14676 [poplar] [flax] FANCI_S2 FANCI solenoid 2 PF14678 [poplar] [flax] FANCI_S4 FANCI solenoid 4 PF14680 [poplar] [flax] FANCI_HD2 FANCI helical domain 2
Representative CDS sequence Show only first row Show all	>Potri.010G011800.1 pacid=42798819 polypeptide=Potri.010G011800.1.p locus=Potri.010G011800 ID=Potri.010G011800.1.v4.1 annot-version=v4.1 ATGACCACCACCGCCACCGCCACCGCCTCCTCAAAACACCAGCCACCACAATTAACAGACGCCGAAATCATAGACCTAGCAAATCAAAACCAGCTCCACC CCTACCTCCTCTCCACATCATCTCACCCTACACTCCTCTCTTACCTCCATAATCGCACTCTCTCCCCTTCACCTTCTCTTCCAATCTGTCAATACACACT CTCTCTTCTCTCTCTCATTTCCCTCTCTCCTCACACTCCTTCTCTCTCGTCTCTTCTCTCTTCTCTCCTCGCTGATTACACCAATCTCTTTCTCTCCTTT CAAATCCCCCGCGATTCGAACTCCCTCAAAACCATCCATTTTTTCAGTACTGTCTTGAATAATGTCCCAATCAAAGATTTAGAGGCCGTTTCCGAGTCAA TCGTGCTTAATTTGTCAAAACTAGTGAGTTTTGAGGACACCCAGATGCTTGATATTCTTCCTGCTTGTTTCAATTTGATGATTAATGAGAATGGGAGGGA ATTTGTAGGCTTGATTTTGGACAGGGTTATTGAGAGTGAATGGTCAAAGGGGTTGTTGGTGAAAATGGTTTCTCTAGTTAGGGAATTCATAGGTTTTATT GATAAAGTGAGAGGGAGGGAGTTTTTGGAGAAGGTGTTTAAGGGAATGAGAAGAGTGGATTTACAGGACTTGCCTTCGCTTGTTTATCAATTACTGGTTT TAACATCAAAAGGGTTTAATAAGAGGGAGGTGATTGAAGGGATTGTTATGTTTTTTGGGTCTGAATTTGGGGGCCCGAAAAGAGGGAGTTCGATTGTTAG GCAAGTTGAAGGGACTGTTTTGCTTCATGTTAATTTTGCGGTGAAGCAGGATCCTTCACTGGGGAAAGAAGTTATAGGGCTTGTGAAGTTGGATTTTAGG GCTCTTAACCATTTTACTATTTCTGTTTTGTTGTCTGTTGCCAGGGTTAGAAGGTTTAGTGAGAGCTCATTGGGAATACTGAAAACTGTTTTGCTGACTG CTTATCGTGATCACAAGTTCGCTAAAAACTGTAAGTGGTTGCCAGAGGATTTCAAGGAAGAGTGTCTGCAGAATGTCCAAATAGCGGAAAAAGCTTTATT AAGAGCTGTTAATGAGAGCAACTATGGAAGAGAGCACATTGTGCCTACTATCGTGCAGTTCAGTTTTCAATTGCTAGAGTCATTGGAAGATGGAAACGTT AGAGAGCTCTGGGATTCTAATGCTATATTGGGCATCGAGGAGCTTAGTATTCAGATGCTGAAAACTCTATTCGATGTCCATGAGATGGCAAGAAATGAGA TTATTGAGCAAAGCAAATCTCGCATCCTTTCTTTGAAGCCAGAGAAGAACATACCAATCATCAGACTGCTTGGTCATCTAGTCCAGAGTTATCCTTACCT GATGCTGGAACACGCTTCCCGTCTGAAGGAATTGTTGGATTATTTTGTTTTTATGCATGGCATGGTTGCCACTCATCTTGTTGCTGCTCTTGTGCCTCTC ATCAAACTTAGTCGTGATCTTCGGGATTACACAATTTTGGTTGTCCGCAAGGCCATGTTTAGACGGGAAGATGCAGTTCGCCTTTCTGCAACAAATGCCA TTTTCAATCTTATACTTGCAGATAAGGAAGCCAAGAGAGAAGGCTCGGTTTCTTTTCAAGACTCATCAAGCCAAGCAAGTTGCAGCCAACATGCTGAAAT ACCATGCATCATGGATGGAGGTCTCTTCCAGGAGCTACGTGGTTTGCTGCAGAGATGTCTTTATCAACAGGCTGAAATCAAGGAAGTCATGTATCATGGT CTTTTGAAGCTTGTCATGGCAGACCCATCATGTGGGGGACCTGTGCTTGATTTTCTCTTGCCCCACTTTCGTTGTTTTTTCAAGGAGGATGCAGATGTTC AACTTGAAATAAGTCGTTGCACTAAATCACTGAGTGGCAATGTTGTCATTGAAGAGCCTCTAGATGCTCTAATGTCTTGTGTTTCTTCAATTTTACTCCT TCAGCCACATGGTAAAGCTGATTGTCCAGACTCTTCGAGGCCATATTTTGGTTTTTCCCTTTCTCAAGAAAATGAGCTAGGAAGTGATCTCTCTCGTGAA TCATTTTCCAATGCTTTGTTAAAGATCCAGAAGTTCCTAAAGAAGATAAATTTGGAAGACTTTCTGAGTCGCATTCAGGGTGATAGCTCGACATCTGTTC AAGAGGAGAAAAGAAAATGCTGTGCATTGATTTTAGCGGGCATCCTTGAAGTAGTAGTGAACACTATCGCAACCAGGTTGAATAAAGCGACAGACATAGA GAAGGTGGATCTCGAAAAGGAACTTGTTGGGTTTGTTAATCTTCACGAGTTACTGGAAAAGGATTTGTGTACAAGATTGAGCACTGGTATCAAAAGGGGG AATGTGCGAGCTACTGCTCCTGCTCCTGGTATGGCTAGTAATATTGAACCTGGCAACAATAGATTGACTCAAGAACGAATTCCTTACTTGACAACTTCAA GCCTCTGTCAGCTAATGCAAACAGCACGTAAGCTATGCAATACTGAATGCTCTAAAACTATTGCAGCATCCCAGCACCATAGCCAGTTGTCATCGAGCAA GCCAGTAACATGCCATAAGATTATGGCTTTTATCTTGAACCATTCCCTTCATCACATAAAATCTTACCAAACTGTGGCGAAAGAAAATCCTTTGAGGACT TTGATATACGGGGAAATTAAATTGATGGGACCTCCTTTGCTGAAGTTAATTTTTTTGCTCAAATCAGGAAAGAAGTTGGTGACAGATGAAAAGAAAAAAG AAAAGAGAATAAAAGATGAAGATAGAAAAGGATATCTACATCTAGCCTTATTATGCATGAAGGAATTGGTCACAATTAGTTTGCAGAACCCACATTTGAC TGGGTTGCTTGAGGATTTGGTGTCAGTATCCACACTAGAGTATCCTGAATTGGATGATAAATATGAAGAAGCCTCCAGGATTGACGATCAGCATATAAGA ATCAAAGAATTGTTTGTTGTCAAAGTTTTGAAGCCATTGTTCAGTGAGCTTCTTGCACAATCTTATTTTCATGAACTTGAGATTATCTCTGATATGCTAT TGGTGATTGGAGAAAAACTGCCCCGCAAACAGAGGAACTCTCATGGAGCCTGGAGTATTCATGTCTGCAAAAGCAATGTCATAAAGAACTCCAAGGCTGC AAGAAGTGTGGTTGCCCTTGCTATCTCTTTAAGCTCCCCACCAAGTGATTTAATTGTAGCTCAAGACATGGCCAAGGAGCTGTTAAAAGTCACTGGATCA GAGACAAGTAACGCAGAAGAGGTGTCTGGATCACACTCTATCATAAACCAGTCAACGAGCAGTAGCATAATTTCTTGTATACAGAAACTAATCGAAGCAA TTATTGTTGATATGGATTGGGCCATCAAAAAACTGAATATATTCACTCTGGTATCTCAAAAAAGCATTCATTTTAGTCAGAACGAGGAACATATTACAGG ATTGGAGTACGAAAACAACCTTTACTCAAGGGCTGAAGCGGTGGTGAAAGTACTTTCTTGCTTTGTTTCGATGAATCTCAAGGAACCTCAAGCAGAGCAT TTGCTCAGATTGACTGCAAAATTTTACAAGCATTTAGCTCAGATGTCAAGGCTCAGGATTGCTTCCAAGGGATGCAAGCAGCTCATACCTAGTCTTGCTT TCCAGAAGCTTGTTGAACTAACTTGCAAGCAGCTAACCGTTCCACTTTATAACTTTGTTGCAGAGATGCAAAGGGAGCAAGAAAATGCTAACAGCAAGTG TACTGCCAACAAGATCAAGAGGGAGAATAAGTGCATCCCCGACTTGATCTACCAGATAGAAGATTGTGAAAAATATCTAATCCAGCTGAGCAAGGTGAGC AAAATCAATTTATTGAGGCATGCCAAGCGTAGTACTTCCAGGGATTTCAAAATAATAGATTCAAGGAAGATTATTACAGAAGAAGATGAACCCAATCACG AGCCTGCCTGTCATGCTGCTGCTACTGCTGAGAATGGATCACCTGAGTCTGGAGACAATGAAGGTAATGAATCAGACAAGGTTTTGTCATCTCAGTCTGG TAGTCCTTTGTCTGAGGAGGAATCCGCATCTGATGGCGAGAATGGAGGTGCCCTTCCTCATGCCAAGAGGGTGAAGAGAGACAGAGTTGTGCTAGATTCT GATGATGAAGCATAA
AA sequence Show only first row Show all	>Potri.010G011800.1 pacid=42798819 polypeptide=Potri.010G011800.1.p locus=Potri.010G011800 ID=Potri.010G011800.1.v4.1 annot-version=v4.1 MTTTATATASSKHQPPQLTDAEIIDLANQNQLHPYLLSTSSHPTLLSYLHNRTLSPSPSLPICQYTLSLLSLISLSPHTPSLSSLLSSLLADYTNLFLSF QIPRDSNSLKTIHFFSTVLNNVPIKDLEAVSESIVLNLSKLVSFEDTQMLDILPACFNLMINENGREFVGLILDRVIESEWSKGLLVKMVSLVREFIGFI DKVRGREFLEKVFKGMRRVDLQDLPSLVYQLLVLTSKGFNKREVIEGIVMFFGSEFGGPKRGSSIVRQVEGTVLLHVNFAVKQDPSLGKEVIGLVKLDFR ALNHFTISVLLSVARVRRFSESSLGILKTVLLTAYRDHKFAKNCKWLPEDFKEECLQNVQIAEKALLRAVNESNYGREHIVPTIVQFSFQLLESLEDGNV RELWDSNAILGIEELSIQMLKTLFDVHEMARNEIIEQSKSRILSLKPEKNIPIIRLLGHLVQSYPYLMLEHASRLKELLDYFVFMHGMVATHLVAALVPL IKLSRDLRDYTILVVRKAMFRREDAVRLSATNAIFNLILADKEAKREGSVSFQDSSSQASCSQHAEIPCIMDGGLFQELRGLLQRCLYQQAEIKEVMYHG LLKLVMADPSCGGPVLDFLLPHFRCFFKEDADVQLEISRCTKSLSGNVVIEEPLDALMSCVSSILLLQPHGKADCPDSSRPYFGFSLSQENELGSDLSRE SFSNALLKIQKFLKKINLEDFLSRIQGDSSTSVQEEKRKCCALILAGILEVVVNTIATRLNKATDIEKVDLEKELVGFVNLHELLEKDLCTRLSTGIKRG NVRATAPAPGMASNIEPGNNRLTQERIPYLTTSSLCQLMQTARKLCNTECSKTIAASQHHSQLSSSKPVTCHKIMAFILNHSLHHIKSYQTVAKENPLRT LIYGEIKLMGPPLLKLIFLLKSGKKLVTDEKKKEKRIKDEDRKGYLHLALLCMKELVTISLQNPHLTGLLEDLVSVSTLEYPELDDKYEEASRIDDQHIR IKELFVVKVLKPLFSELLAQSYFHELEIISDMLLVIGEKLPRKQRNSHGAWSIHVCKSNVIKNSKAARSVVALAISLSSPPSDLIVAQDMAKELLKVTGS ETSNAEEVSGSHSIINQSTSSSIISCIQKLIEAIIVDMDWAIKKLNIFTLVSQKSIHFSQNEEHITGLEYENNLYSRAEAVVKVLSCFVSMNLKEPQAEH LLRLTAKFYKHLAQMSRLRIASKGCKQLIPSLAFQKLVELTCKQLTVPLYNFVAEMQREQENANSKCTANKIKRENKCIPDLIYQIEDCEKYLIQLSKVS KINLLRHAKRSTSRDFKIIDSRKIITEEDEPNHEPACHAAATAENGSPESGDNEGNESDKVLSSQSGSPLSEEESASDGENGGALPHAKRVKRDRVVLDS DDEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49110			unknown protein		Potri.010G011800 [exp]	0	1
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Potri.003G021700 [exp]	2.23	0.8525
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	3.74	0.8288	CHR919
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	7.28	0.8777
AT1G49740			PLC-like phosphodiesterases su...		Potri.009G100332 [exp]	8.94	0.7596
AT4G14180		ATPRD1	putative recombination initiat...		Potri.002G232700 [exp]	9.16	0.8495
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	10.39	0.7956
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	10.81	0.8581	DMT901,Pt-MET1.2
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	10.86	0.8588
AT1G25570			Di-glucose binding protein wit...		Potri.008G117000 [exp]	14.73	0.7026
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Potri.014G175350 [exp]	16.97	0.8333

Compare expression of checked genes

Potri.010G011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.