Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MFP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06860 1154 / 0 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 802 / 0 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G15290 130 / 2e-33 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT4G16800 71 / 3e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16210 71 / 4e-13 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT5G43280 61 / 4e-10 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT1G60550 50 / 4e-06 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G220400 [exp] 1310 / 0 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 837 / 0 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.001G398600 [exp] 127 / 2e-32 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.001G153300 [exp] 82 / 7e-17 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.008G104500 [exp] 72 / 7e-14 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G146400 [exp] 70 / 8e-13 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.003G080800 [exp] 68 / 3e-12 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 61 / 1e-09 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.001G329900 [exp] 43 / 0.0005 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037495 [exp] 1245 / 0 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10043224 [exp] 798 / 0 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10011102 [exp] 780 / 0 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10006502 [exp] 701 / 0 AT3G06860 670 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 550 / 0 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10020828 [exp] 139 / 2e-36 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10012681 [exp] 133 / 2e-34 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10010994 [exp] 76 / 1e-14 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10016920 [exp] 69 / 1e-12 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10037777 [exp] 67 / 2e-11 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00725 [poplar] [flax] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF02737 [poplar] [flax] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL0127 [poplar] [flax] ClpP_crotonase PF16113 [poplar] [flax] ECH_2 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.010G011900.4 pacid=42798337 polypeptide=Potri.010G011900.4.p locus=Potri.010G011900 ID=Potri.010G011900.4.v4.1 annot-version=v4.1 ATGGAAGGAAGCAGGACTAAGGGAAGAACCACAATTGAAGTTGGAGCTGATGGGGTGGCTTTAATCACCATCATCAATCCTCCTGTTAATTCGCTCTCTT TTGACGTGTTGTACAGCTTGAAGGACAGTTTCGAGCAAGCTTTAAGAAGAGATGATGTGAAGGCGATTGTTATTACAGGTGCAAAGGGCAAGTTCTCTGG TGGCTTTGATATTTCTTCATTTGGAGGAGTTCAAGGGGGAAAATCGAATGAACCGAAGCCTGGTTTTATATCCGTGGAGATTCTCAGTGATACTGTAGAA GCTGCGAAAAAGCCTTCGGTTGCTGCAATTGATGGCCTTGCCTTAGGTGGGGGACTAGAGGTTGCAATGGCATGCCATGCACGTATCTCAACCTCTACTG CTCAATTAGGCCTACCTGAACTTCAACTTGGCTTAATTCCTGGTTTTGGAGGAACACAGAGACTTCCACGTCTTGTAGGTATCTCAAAGGCCCTTGAAAT GATGCTGACATCAAAACCAGTTAAAGGTGAGGAAGCTCATGCTCTGGGTCTTGTGGATGCTGTTGTTTCACCAAATGAGTTGGTAAGCACTGCACGTCAG TGGGCCCTGGATATCTTGGAGCGTAGGAGACCATGGATTGCTAGTCTTTACAAGACCGAAAAATTAGATTCCCTTGGTGAGGCAAGGGAAATATTCAAGT TTGCAAGAGAACAAGTCCGGAAACGAGCCCCCAATCTAACACATCCTATAGTTTGCATTGATGTTATTGAACACGGCATAGTTTCTGGTCCGCGTGATGG ACTCTACAAGGAGCTTGAAAGTTTCCATGAACTTGTGCGTTCTGACACCTGCAAGAGCTTGATCCACATCTTCTTTGCTCAGCGAGGAACAACCAAGGTT CCAGGAATTACTGATCTGGGCTTGGTACCTAGACGAGTGAAGAAGGTTGCTGTGCTTGGTGGAGGATTGATGGGTTCAGGGATAGCAACAGCATTAGTTC TCAGTAATTATCCAGTGATCCTGAAAGAAGTAAATAACCAATTCTTGCAGGCTGGAATTGGTAGAGTCAGAGCCAATCTCCAAAGTCGTGTCAAGAAAGG AAGAATGACACAAGAAAAGTTTGAAAAAACCATGTCTCTTCTCAAGGGCGCCCTTGATTATGAAAGCTTTAAAGACGTGGACATGGTCATAGAGGCTGTG ATTGAAAATGTTTCTTTGAAGCAACAAATTTTTTCTGATCTAGAAAAATATTGCCCACCTCATTGTATACTTGCCAGTAACACCTCCACTATTGACTTGA ACTTGATTGGAAAGCAGACCAAGTCACAAGATAGGATTATTGGAGCCCATTTCTTTAGTCCGGCTCATGTTATGCCACTTTTGGAAATTGTTCGTACCAA GCAGACATCTCCTCAGGTAATTGTGGATTTGCTAGATGTTGGGAAGAAAATCAGGAAGACTCCAGTTGTGGTTGGAAATTGCACAGGCTTTGCTGTCAAC AGGATGTTCTTTCCATACACCCAAGCTGCTCTTTTACTTGTTGAACATGGAGCAGATCTTTATCAGATCGATAAGGTGATCACCAAATTTGGAATGCCAA TGGGCCCTTTCAGGTTGGTTGACCTGGTTGGGTTTGGTGTTGCAATTGCAACTGGCACGCAATTTGTTGTGAATTTCCCTGAGAGAACCTATAAATCAAT GCTTATCCCACTAATGCAAGAGGATAAGAGAGCTGGTGAAACTACTCGTAAAGGATTCTATTTGTATGATGATAGGCGTAAAGCTAAGCCAGATCCTGAA TTAAGGAAATACATTGAGAAAGCAAGAAACATTTCTGGTGTTGCCAATGACCCCAAGCTTGCAAAATTGCCAGAGAAGGACATTGTAGAGATGATATTTT TCCCAGTGGTGAATGAAGCCTGCCGAGTCTTTGCCGAAGGAATTGCAGTCAAAGCTGCAGACCTTGACATTTCGTCTCTAATGGGAATGGGTTTTCCACC TTACAGGGGGGGGATTATGTTCTGGGCTGATTCTCTTGGATCCAAGTACATTTATTCAAGATTGGAGGAATGGTCAAAGACATATGGAGAATTCTTTAAG CCCTGTGCCTTCTTGGCTGAACGAGCTGCAAAGGGTGCTCCTCTGAGTTCTCCGGTGGACCAAGCAAAGTCTCGGCTGTAA
AA sequence Show only first row Show all	>Potri.010G011900.4 pacid=42798337 polypeptide=Potri.010G011900.4.p locus=Potri.010G011900 ID=Potri.010G011900.4.v4.1 annot-version=v4.1 MEGSRTKGRTTIEVGADGVALITIINPPVNSLSFDVLYSLKDSFEQALRRDDVKAIVITGAKGKFSGGFDISSFGGVQGGKSNEPKPGFISVEILSDTVE AAKKPSVAAIDGLALGGGLEVAMACHARISTSTAQLGLPELQLGLIPGFGGTQRLPRLVGISKALEMMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQ WALDILERRRPWIASLYKTEKLDSLGEAREIFKFAREQVRKRAPNLTHPIVCIDVIEHGIVSGPRDGLYKELESFHELVRSDTCKSLIHIFFAQRGTTKV PGITDLGLVPRRVKKVAVLGGGLMGSGIATALVLSNYPVILKEVNNQFLQAGIGRVRANLQSRVKKGRMTQEKFEKTMSLLKGALDYESFKDVDMVIEAV IENVSLKQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRTKQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVN RMFFPYTQAALLLVEHGADLYQIDKVITKFGMPMGPFRLVDLVGFGVAIATGTQFVVNFPERTYKSMLIPLMQEDKRAGETTRKGFYLYDDRRKAKPDPE LRKYIEKARNISGVANDPKLAKLPEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDISSLMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSKTYGEFFK PCAFLAERAAKGAPLSSPVDQAKSRL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Potri.010G011900 [exp]	0	1	Pt-MFP2.2
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051900 [exp]	4.00	0.8806
AT5G18130			unknown protein		Potri.013G057200 [exp]	8.30	0.8893
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456400 [exp]	9.38	0.8997
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036400 [exp]	10.24	0.8818
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	10.29	0.8932
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.004G217200 [exp]	12.64	0.8879
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.010G150400 [exp]	15.00	0.8851	Pt-GAS1.2
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G250700 [exp]	20.97	0.8767
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.008G007000 [exp]	22.97	0.8834
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.001G167100 [exp]	23.66	0.8616	ALDH7.1

Compare expression of checked genes

Potri.010G011900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.