Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49100 140 / 1e-37 unknown protein AT3G06868 129 / 2e-33 unknown protein AT3G06870 73 / 1e-14 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G220700 [exp] 472 / 4e-166 AT3G06868 155 / 1e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006504 [exp] 238 / 5e-74 AT5G49100 221 / 5e-68 unknown protein Lus10037496 [exp] 234 / 2e-72 AT5G49100 216 / 6e-66 unknown protein Lus10024784 [exp] 176 / 7e-51 AT3G06868 190 / 1e-56 unknown protein Lus10001474 [exp] 166 / 3e-47 AT3G06868 194 / 1e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G012000.1 pacid=42800087 polypeptide=Potri.010G012000.1.p locus=Potri.010G012000 ID=Potri.010G012000.1.v4.1 annot-version=v4.1 ATGATGGATATGAAAGGAGGAGTTGGTGTTGGAGGAGGTAGAGTTGGTGTAGGTGAAGAAGACTTGGGGGATGGTATGCAATGCAGTGACCATCCTTACA GAAACAACCCAGGTGGTATCTGTGCCTTTTGTCTTCAAGAAAAGCTTGGCAAGCTTGTTTCTTCTTCGTTTCCTTTACCTATACGTGGCTCTTCCTCTTC CTCCTCTTCCCCTTCTTTTAGATCTGTTATTGGTGTTGGTGGCTCTAGCAATGTTGGTGCAGGTACTTCACTATCACTTGCGGCGCGTCCCACAACAACA AAATGTAGAAATGATGGTGGCAGTAATAGTCACTATCAAGAATATTACACAAGGAGGGCCAGGATCCCTTTTCTTTTGGCTAAAAAGAAGAAGAAAATCA TGGTAGCATCATCAACATCAGATCGTGATATTGTTTTCAAGAGAAGCAAATCTACTACAACTCCTAGGAGAAGCCATTTCTTGGATGCTGCTACTGATGA TGGTGAGGATTTTAGCCCAAGAAGGAGAGGGTTTTGGTCATTTCTTTATCTCTCGTCTTCGAAGCCCGGTACTTCAACTAAGAAAATAGAAAAGGTGTCT TCCTTGGCTTCAAGTACAAGAGCAATAACCACCACCTCCACAAATGGGTCCACGGTGAGGCCAAAAGAGAAGTGCTTGGGGTCTTCTTTGTCAAGGAAAG GTGACAGTATTGTGGTTGTGGAGGATGACGATGATAGTCCTAACAGCCAAGCAACTGCCTCTGCCTCCACTTTTGAGAGAAAGGTGTCAAGATCTAGATC TGTTGGGTGTGGGAGCAGGAGCTTCTCTGGTGATTTCTTTGAGAGAATCTCTACTGGGTTTGGTGATTGCACTCTAAGAAGAGTGGAGTCCCAAAGGGAA GGCAAGCCAAAGGTCACTTCTGGGGCTTCTCACATGAAAGAGAGGGTCAGGTGTGGCGGTATCTTCGGTGGGTTCAACATAACCTCCTCGTCGTCTTCCT CTTCATCATCATCTTACTGGGTCTCATCATCAGCTGAAGACATGAATGGGAAATCATCAGGAGCTGGGCCTCTTGCTCATGGAAGAAGCAGGAGCTGGGG TTGGGCTTTTGCTAGCCCAATGAGAGCTTTTGGCAGCAAACCCTCTTCAAAAGATGGAAAAAGAAACATCAAGCATACCACTCCAAACTTGTCTGCTATT CCTTCTTTGTTAGCTGTGAGAGGCTAA
AA sequence Show only first row Show all	>Potri.010G012000.1 pacid=42800087 polypeptide=Potri.010G012000.1.p locus=Potri.010G012000 ID=Potri.010G012000.1.v4.1 annot-version=v4.1 MMDMKGGVGVGGGRVGVGEEDLGDGMQCSDHPYRNNPGGICAFCLQEKLGKLVSSSFPLPIRGSSSSSSSPSFRSVIGVGGSSNVGAGTSLSLAARPTTT KCRNDGGSNSHYQEYYTRRARIPFLLAKKKKKIMVASSTSDRDIVFKRSKSTTTPRRSHFLDAATDDGEDFSPRRRGFWSFLYLSSSKPGTSTKKIEKVS SLASSTRAITTTSTNGSTVRPKEKCLGSSLSRKGDSIVVVEDDDDSPNSQATASASTFERKVSRSRSVGCGSRSFSGDFFERISTGFGDCTLRRVESQRE GKPKVTSGASHMKERVRCGGIFGGFNITSSSSSSSSSSYWVSSSAEDMNGKSSGAGPLAHGRSRSWGWAFASPMRAFGSKPSSKDGKRNIKHTTPNLSAI PSLLAVRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49100			unknown protein		Potri.010G012000 [exp]	0	1
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G062000 [exp]	2.23	0.9639
					Potri.001G049501 [exp]	4.47	0.9651
AT5G19090			Heavy metal transport/detoxifi...		Potri.014G140600 [exp]	6.00	0.9604
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Potri.012G117500 [exp]	6.32	0.9586
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.001G448100 [exp]	7.14	0.9535
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.019G128200 [exp]	8.66	0.9545
AT3G50180			Plant protein of unknown funct...		Potri.016G039866 [exp]	10.19	0.9611
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Potri.007G066800 [exp]	11.31	0.9461
AT5G07040			RING/U-box superfamily protein...		Potri.001G032300 [exp]	11.66	0.9381
AT3G48200			unknown protein		Potri.001G330000 [exp]	13.26	0.9435

Compare expression of checked genes

Potri.010G012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.