Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15900 731 / 0 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 701 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 119 / 2e-28 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 117 / 7e-28 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 111 / 6e-27 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 112 / 3e-26 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G08390 109 / 3e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 108 / 8e-25 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G13480 105 / 6e-24 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G21390 104 / 2e-23 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002300 [exp] 117 / 1e-27 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 116 / 3e-27 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 115 / 4e-27 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 114 / 6e-27 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 114 / 7e-27 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 110 / 8e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G197900 [exp] 113 / 2e-26 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.T125206 [exp] 112 / 4e-26 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G306500 [exp] 101 / 9e-24 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006511 [exp] 791 / 0 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 788 / 0 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10024785 [exp] 452 / 9e-156 AT4G15900 456 / 4e-157 pleiotropic regulatory locus 1 (.1) Lus10001473 [exp] 190 / 3e-56 AT3G16650 219 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 121 / 5e-29 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 121 / 7e-29 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 118 / 2e-28 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 117 / 6e-28 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10026837 [exp] 116 / 2e-27 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041007 [exp] 114 / 8e-27 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G012800.1 pacid=42797958 polypeptide=Potri.010G012800.1.p locus=Potri.010G012800 ID=Potri.010G012800.1.v4.1 annot-version=v4.1 ATGCCAGGTCCCACAGTAGAAATGGAGCCAATAGAGCCACAATCAGTGAAGAAACTTAGCTTCAAATCTCTAAAACGAACCAGCGATCTTTTCTCTCCTA CTCACGCTCAGCTCGCTCCTCCCGATCCTGAAAGTAAAAAAATTCGAATGAACCACAAGATAAATTTGGAGTATAAAGGAATCAAAAGCACGTGTGAGCC GCAACAAGTTAATTCAGCCACAACGGAAGCTTCAGGGCCTTCTAATGTCCTTGCTCTTCCGGGTTCAGGTGATTCTAGTGTTTCGCAGAAAAGTGGAGCT CAAAATGCATTGGTTGTTGGCCCATCTTTGCAATCAAAGGCGCGGAGTGATGGTGGCGTTTCGGGCAAAAGCACTGCAGTGATCACTGCTTCTGGTTCAT CTGAAAGGAACTTCTCAACCTCTGCTATAATGGAAAGAATCCCAAGCAAATGGCCACGCCCTGTTTGGCGTCCTCCATGGAAGAACTACAGGGTCATTAG TGGTCATTTGGGTTGGGTGAGATCTGTTGCATTTGATCCAAGTAATACATGGTTTTGTACTGGTTCTGCAGATCGAACAATCAAGATATGGGATGTAGGA AGTGGAAGGTTAAAGCTCACACTAACTGGACACATCGAGCAAGTACGAGGTCTTGCCGTTAGCCAAAGACATACCTACATGTTCTCTGCTGGTGATGATA AACAGGTTAAATGCTGGGACCTTGAACAGAATAAGGCAATCCGGTCTTATCATGGCCATCTAAGTGGTGTCTACTGCTTGGCCCTTCATCCTACTATTGA CCTTTTGCTTACTGGGGGGCGTGATTCCGTCTGCCGGGTCTGGGATATTCGTACAAAGGTGCAAGTTTTTGCACTGTCTGGGCATGATAATACAGTGTGC TCAGTTTTTACTCGACCTACGGATCCACAAGTGGTTACTGGTTCCCATGACTCAACTATCAAGTTCTGGGATCTTAGATATGGTAAGACTATGTTAACTC TTACACATCACAAGAAATCTGTGCGAGCCATGGCGCTGCATCCGACAGAGCACTGCTTTGCATCTGCATCAGCTGACAACATTAAGAAATTCAATCTTCC AAAAGGAGAATTTTTACACAACATGCTTTCTCAGCAGAAAACCATCATTAATGCAATGGCTGTCAATGAAGATGGTGTAATGGCCACAGGAGGTGACAAC GGGAGTTTATGGTTCTGGGATTGGAAGAGTGGTCATAATTTCCAGCAAGCCCAGACAATTGTACAGCCTGGCTCATTGGATAGTGAAGCTGGTATATATG CTGTCTGCTATGACGTAAGTGGTTCAAGGCTTGTTACATGTGAAGCTGACAAGACAATAAAAATGTGGAAAGAGGATGAAGATGCCACCCCAGAAACTCA TCCCCTCAACTACAAGCCACCGAAAGATATCCGGCGCTTCTAA
AA sequence Show only first row Show all	>Potri.010G012800.1 pacid=42797958 polypeptide=Potri.010G012800.1.p locus=Potri.010G012800 ID=Potri.010G012800.1.v4.1 annot-version=v4.1 MPGPTVEMEPIEPQSVKKLSFKSLKRTSDLFSPTHAQLAPPDPESKKIRMNHKINLEYKGIKSTCEPQQVNSATTEASGPSNVLALPGSGDSSVSQKSGA QNALVVGPSLQSKARSDGGVSGKSTAVITASGSSERNFSTSAIMERIPSKWPRPVWRPPWKNYRVISGHLGWVRSVAFDPSNTWFCTGSADRTIKIWDVG SGRLKLTLTGHIEQVRGLAVSQRHTYMFSAGDDKQVKCWDLEQNKAIRSYHGHLSGVYCLALHPTIDLLLTGGRDSVCRVWDIRTKVQVFALSGHDNTVC SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEHCFASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEDGVMATGGDN GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYAVCYDVSGSRLVTCEADKTIKMWKEDEDATPETHPLNYKPPKDIRRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Potri.010G012800 [exp]	0	1	PRL1.1
AT2G34750			RNA polymerase I specific tran...		Potri.005G098500 [exp]	3.16	0.7733
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.005G173400 [exp]	4.58	0.7821
AT1G75980			Single hybrid motif superfamil...		Potri.002G018100 [exp]	4.89	0.7644
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.006G095500 [exp]	8.48	0.7561	UCP2.2
					Potri.001G137000 [exp]	11.53	0.7044
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	14.42	0.7112
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	14.69	0.7437
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.016G115400 [exp]	16.43	0.7193
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.014G067700 [exp]	18.76	0.7062	Pt-PAG1.3
AT1G23280			MAK16 protein-related (.1)		Potri.015G083700 [exp]	21.90	0.6950

Compare expression of checked genes

Potri.010G012800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.