Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26940 368 / 5e-131 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 67 / 1e-12 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT1G01940 63 / 2e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G36130 62 / 6e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G33060 64 / 1e-11 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G53720 54 / 2e-08 ATCYP59, CYP59 cyclophilin 59 (.1) AT5G67530 52 / 7e-08 ATPUB49 plant U-box 49 (.1) AT2G15790 50 / 3e-07 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G63400 50 / 5e-07 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G34870 44 / 1e-05 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075600 [exp] 62 / 7e-12 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 63 / 2e-11 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.002G149700 [exp] 60 / 5e-11 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 59 / 6e-11 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G097500 [exp] 54 / 3e-08 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.018G061700 [exp] 54 / 3e-08 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 50 / 3e-07 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.004G144300 [exp] 49 / 8e-07 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.002G185200 [exp] 48 / 1e-06 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037197 [exp] 381 / 3e-136 AT1G26940 374 / 1e-133 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10036733 [exp] 155 / 2e-48 AT1G26940 151 / 5e-47 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009237 [exp] 65 / 7e-13 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006271 [exp] 62 / 4e-11 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10020573 [exp] 62 / 4e-11 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10024999 [exp] 61 / 9e-11 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024831 [exp] 59 / 7e-10 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 59 / 8e-10 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10021335 [exp] 54 / 9e-09 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031194 [exp] 54 / 3e-08 AT1G53720 640 / 0.0 cyclophilin 59 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.010G012900.5 pacid=42799472 polypeptide=Potri.010G012900.5.p locus=Potri.010G012900 ID=Potri.010G012900.5.v4.1 annot-version=v4.1 ATGAAGATCCCATGGTGGGTGGTCTCCTTTGCATATGTTGCCCTCGTTGCTGCCTCCTCGTCTCAGGATCCTCACCTAAGTTCTGCTCGTGTCGTTTTTC AGACAAACTATGGAGACATTGAGTTTGGATTCTTTCCTTCTGTGGCTCCTCAAACTGTAGATCATATTTTCAAGCTTGTTCGACTTGGATGCTACAACAC CAATCACTTCTTTCGGGTTGATAAAGGGTTTGTTGCTCAAGTAGCAGATGTGGTTGGTGGACGATCGGCTCCGATGAATGAAGAGCAAATAAAGGAAGCT AAGAAGACTGTTGTTGGTGAATTCAGTGATGTCAAACATGTTAGGGGAATTCTTTCTATGGGCAGATTTGAAGATCCAAACAGTGCACAATCCTCATTCT CAATGCTTCTTGGAAATGCCCCTCATCTAGATGGTCAATATGCAATATTTGGCAAGGTTACCAAAGGTGATGACACACTGACTAAGCTTGAGCAACTCCG TACTCGTAAGGAGGGAATTTTTGTGATGCCTACTGAACGCATCACAATCCTGTCATCATATTATTATGATACTGAGATGGAGAGTTGCGAAGAGGAGAGG TCAGTCTTGAAACGAAGACTCTCTGCATCAGCTGTTGAAATTGAGAAACAGAGAATGAAATGCTTCCCATGA
AA sequence Show only first row Show all	>Potri.010G012900.5 pacid=42799472 polypeptide=Potri.010G012900.5.p locus=Potri.010G012900 ID=Potri.010G012900.5.v4.1 annot-version=v4.1 MKIPWWVVSFAYVALVAASSSQDPHLSSARVVFQTNYGDIEFGFFPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEEQIKEA KKTVVGEFSDVKHVRGILSMGRFEDPNSAQSSFSMLLGNAPHLDGQYAIFGKVTKGDDTLTKLEQLRTRKEGIFVMPTERITILSSYYYDTEMESCEEER SVLKRRLSASAVEIEKQRMKCFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26940			Cyclophilin-like peptidyl-prol...		Potri.010G012900 [exp]	0	1
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.005G108000 [exp]	2.23	0.9539
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.019G029200 [exp]	3.46	0.9519	VATE.1
AT1G68680			unknown protein		Potri.011G024500 [exp]	5.09	0.9437
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.005G235300 [exp]	5.65	0.9315
AT3G07950			rhomboid protein-related (.1)		Potri.008G041100 [exp]	5.74	0.9513
AT5G15320			unknown protein		Potri.002G024900 [exp]	5.91	0.9488
AT5G27490			Integral membrane Yip1 family ...		Potri.013G023400 [exp]	6.70	0.9496
AT3G44150			unknown protein		Potri.016G068000 [exp]	6.92	0.9499
AT3G42050			vacuolar ATP synthase subunit ...		Potri.013G078700 [exp]	7.93	0.9366
AT4G35335			Nucleotide-sugar transporter f...		Potri.016G113200 [exp]	8.71	0.9376

Compare expression of checked genes

Potri.010G012900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.