Plant FIBer expression Database

Potri.010G013100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06890 66 / 1e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G221000
[exp]
93 / 2e-25 AT3G06890 83 / 1e-21 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037501
[exp]
83 / 4e-21 AT3G06890 108 / 4e-31 unknown protein
Lus10006514
[exp]
79 / 1e-19 AT3G06890 104 / 2e-29 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G013100.1 pacid=42796884 polypeptide=Potri.010G013100.1.p locus=Potri.010G013100 ID=Potri.010G013100.1.v4.1 annot-version=v4.1
ATGTTCCAAGAGAGACATCGTCATCAACATCGTGGCCCACCCCATGGAATCCTACTAGCAGTGGTAGTCTGCGTAGTGGTGCTAGCTCCGTTCATCTTTG
GTGACCAAGGAGCAGCCATAACCGAGGGTTTTGCTGAGCTTTTAAGCCCGATGGGTCTCTTACTCTTGCCCATTATCCTTCTCTTGGCCATCCAGTTCCT
TTCCTCTGATCGTGGCTCGTTTGTCTCCTCTGTCTTCTCTACTGGTGAGCCCGATTCCTTCCACCGACTTAGTGGATCACCTGTTGGTGTTGCCCTCTTT
CTTGCTCTGGTCTTGTTCTTGCTTTACAATCGTATGTCCATCTTTGGTGGTGGTGATGATTCTGGCGATTAA
AA sequence
>Potri.010G013100.1 pacid=42796884 polypeptide=Potri.010G013100.1.p locus=Potri.010G013100 ID=Potri.010G013100.1.v4.1 annot-version=v4.1
MFQERHRHQHRGPPHGILLAVVVCVVVLAPFIFGDQGAAITEGFAELLSPMGLLLLPIILLLAIQFLSSDRGSFVSSVFSTGEPDSFHRLSGSPVGVALF
LALVLFLLYNRMSIFGGGDDSGD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06890 unknown protein Potri.010G013100
[exp]
0 1
AT1G32120 unknown protein Potri.001G132800
[exp]
2.44 0.7594
AT1G20650 ASG5 ALTERED SEED GERMINATION 5, Pr... Potri.005G252000
[exp]
3.00 0.7679
AT5G52020 AP2_ERF Integrase-type DNA-binding sup... Potri.015G136300
[exp]
3.87 0.7425
AT5G11070 unknown protein Potri.006G259200
[exp]
6.32 0.7890
AT4G24630 DHHC-type zinc finger family p... Potri.002G065500
[exp]
6.48 0.7347
AT4G37260 MYB ATMYB73 myb domain protein 73 (.1) Potri.014G035100
[exp]
6.63 0.7872
Potri.002G021150
[exp]
7.14 0.7399
AT5G38700 unknown protein Potri.014G123400
[exp]
7.48 0.7654
AT5G38700 unknown protein Potri.002G198800
[exp]
8.36 0.7603
Potri.005G084100
[exp]
8.83 0.7165

Potri.010G013100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.