Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49060 327 / 2e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT3G57340 210 / 1e-64 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 168 / 2e-49 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G80030 77 / 4e-15 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G12170 69 / 3e-13 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 69 / 9e-13 DNAJ heat shock family protein (.1) AT4G19570 69 / 1e-12 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 68 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G06778 66 / 4e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G59725 67 / 5e-12 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153700 [exp] 222 / 3e-69 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.003G171200 [exp] 74 / 4e-14 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G056400 [exp] 71 / 1e-13 AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G057200 [exp] 72 / 2e-13 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.016G051800 [exp] 71 / 2e-13 AT3G12170 353 / 2e-123 Chaperone DnaJ-domain superfamily protein (.1) Potri.003G031800 [exp] 71 / 5e-13 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.009G065500 [exp] 70 / 7e-13 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 70 / 8e-13 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G073900 [exp] 69 / 2e-12 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037502 [exp] 359 / 6e-123 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10006515 [exp] 318 / 2e-107 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10019421 [exp] 205 / 1e-62 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10030079 [exp] 201 / 4e-61 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10043277 [exp] 200 / 3e-59 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10031336 [exp] 77 / 3e-15 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10010323 [exp] 73 / 3e-14 AT3G12170 363 / 4e-127 Chaperone DnaJ-domain superfamily protein (.1) Lus10013402 [exp] 73 / 4e-14 AT3G12170 361 / 2e-126 Chaperone DnaJ-domain superfamily protein (.1) Lus10031908 [exp] 73 / 7e-14 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10026315 [exp] 71 / 2e-13 AT3G12170 355 / 3e-124 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF09320 [poplar] [flax] DUF1977 Domain of unknown function (DUF1977)
Representative CDS sequence Show only first row Show all	>Potri.010G013200.4 pacid=42800309 polypeptide=Potri.010G013200.4.p locus=Potri.010G013200 ID=Potri.010G013200.4.v4.1 annot-version=v4.1 ATGCTAAATTGTCTTCGTTATCTTTACACAGATTTTCTTAAATTGTTTGTGTTGAGGTTGTGGGAATTAATAATTATCATGGATGGAAACAAAGATGAAG CAATAAGATGTGTTAGAATTGCCGAAGAAGCAATCGCATCCGGCAATAAACAACGCGCTTTCAAATTTATTAAAATGGCGCAACGTCTTAATCATAATTT GTCTGTTAATCATCTTTTATCTGCATGTGAGAAGCTTGATTCATCGGAAAACTCTGCTTCCGTGGATCAAAGTGATCCCAAGGATAGGAATACGAATGGT TTTGTTAAGAGTGATGATGGTGATGAGGGTATGAGTGCGGAGAGGAGTTTTACTGAGGAGCATGTGCACTTGATTAGGCATATTAATAGGAATAAGGATT ACTATGGGATTCTTGGGGTCGATAAGAGCTGTTCCGTTGAAGAGATTAGGAAGGCGTATAGGAAACTGTCGTTGAAAGTTCATCCTGATAAGAATAAAGC TCCGGGATCGGAGGAGGCGTTTAAGAAGTTATGCAAGGCGTTTAAGTGTTTGAGTGATGGTGATTCCAGGAAGCAGTATGATCAGACGGGTTTGGTTGAC GAGTTTGAGCATAACCAGCAGTATAATAATAATAATGTTAGGCGGCGGAGAACAAGTGCGCGTGGTTCTTATTATGACGACGAGTTTGATCCTGATGAGA TATTCAGGGCTTTTTTTGGTCAGGCAGATGTGTTTAGGGCTCGTCATGTTTATAGGAATAGAGAAACGGATGGTCAACAGAGGGGGGAGCAGGGAGGGGG ACCTAATTTGATTGTTCTGCTGCAAATACTGCCCTTCTTGTTGATTATTTTGCTTGCTTATCTGCCGTTTTCAGAGCCCGAGTACTCTTTGCTTAAGAAT GTAGCTTATCAGATTCCCATGTCTACTGAAAAGTATGGCGTGGAGTATTTTGTCAAATCATCAGCATTTGATAAGAACTTTCCTCCTGGAAGTCCTGCTC GAGATAGCATTGAAGACAGTGTGATTAAGGATTACAGAAATATGCTTTGGCGGTACTGTAACATAGAAATCCGCAGACGTCAATGGAGTAGGAATATGCC CACTCCTAACTGTGATAAGCTACGTGATCTCGGATTAGCATGA
AA sequence Show only first row Show all	>Potri.010G013200.4 pacid=42800309 polypeptide=Potri.010G013200.4.p locus=Potri.010G013200 ID=Potri.010G013200.4.v4.1 annot-version=v4.1 MLNCLRYLYTDFLKLFVLRLWELIIIMDGNKDEAIRCVRIAEEAIASGNKQRAFKFIKMAQRLNHNLSVNHLLSACEKLDSSENSASVDQSDPKDRNTNG FVKSDDGDEGMSAERSFTEEHVHLIRHINRNKDYYGILGVDKSCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKLCKAFKCLSDGDSRKQYDQTGLVD EFEHNQQYNNNNVRRRRTSARGSYYDDEFDPDEIFRAFFGQADVFRARHVYRNRETDGQQRGEQGGGPNLIVLLQILPFLLIILLAYLPFSEPEYSLLKN VAYQIPMSTEKYGVEYFVKSSAFDKNFPPGSPARDSIEDSVIKDYRNMLWRYCNIEIRRRQWSRNMPTPNCDKLRDLGLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49060			Heat shock protein DnaJ, N-ter...		Potri.010G013200 [exp]	0	1
AT1G31335			unknown protein		Potri.006G127000 [exp]	2.82	0.8644
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Potri.001G251600 [exp]	6.00	0.8512
AT5G35080			unknown protein		Potri.006G061600 [exp]	10.39	0.7626
AT4G09830			Uncharacterised conserved prot...		Potri.005G196400 [exp]	14.69	0.8010
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	15.16	0.7518
AT4G19140			unknown protein		Potri.001G130900 [exp]	15.19	0.8056
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Potri.011G165400 [exp]	15.58	0.8448
AT3G16640		TCTP	translationally controlled tum...		Potri.010G013400 [exp]	16.43	0.7977	Pt-TCTP.2
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.005G159100 [exp]	19.41	0.7930
AT5G41560			unknown protein		Potri.001G099200 [exp]	19.77	0.7752

Compare expression of checked genes

Potri.010G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.