Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15890 1379 / 0 binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001471 [exp] 1563 / 0 AT4G15890 1465 / 0.0 binding (.1) Lus10024785 [exp] 129 / 5e-31 AT4G15900 456 / 4e-157 pleiotropic regulatory locus 1 (.1) Lus10024786 [exp] 83 / 7e-18 ND 62 / 1e-11
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12717 [poplar] [flax] Cnd1 non-SMC mitotic condensation complex subunit 1
Representative CDS sequence Show only first row Show all	>Potri.010G013300.3 pacid=42797552 polypeptide=Potri.010G013300.3.p locus=Potri.010G013300 ID=Potri.010G013300.3.v4.1 annot-version=v4.1 ATGGAAGAAGAAGAAGATCCAACAGTCTGTGCCCTAATCACAGACCTAGAAGAAACCCTAAACACTCAAAACCAATCACAATCACTTCCTTTCACTCTCT CAACCCTCCAAAATCTCCAATCTCTCCTAGATTCAAATGACCCCCAAATTCTTTCTCAATTCCTCTCCAGTCTCTCCTCTAAATCCTTCTCTTTATCTTC TCTTCTCCCCTCTCTCACTTCCGCAATGGACTCGGCCCCTACGCATCTTTCCCTCCTATCCTCAAAAATTTACCTCTCTCTTATTCTTTTCCCTAATTCC CCAGTTTTCACTCTTTTCAATCCCATTTCTTTTCTCGCTCTCCTTCGCTCGCTTCGCCGGGCTGTTAAGTCCCCTCGCTGCTGCCCACAAGAAGGAAATT CTTCGGGAGTGGCTAAGAAGAGAAAAGGGAGGAAAAGAGGAGGGATTGTTGCGTGTAATAATGGGGGTGGTGATGGGGATGGGGGTGAGAGTGAGGGTGG GGGTGAGGGTTTTTTTGACGTGAGAGTTTTTTTATGTGTTATTGAGAGATTAGTATTTGTTTTAGACTTGATTCACTTGGACAGGTTTCCTGATAGTTTG AAGTGTTTGGTTCAAACTATAGTGGAAATTCTGGTTTTGGCGACCAGTAGGGAAATGGGTGGGGGGTTTGAGAGATTGGCGGGTTTGTGTTCGAAGATTT TGTGTCAAGTTTTGAAATCTGAGCACGGAGAGGAAGGGGAGACAGCGGCGGAGGTTTTGAAGGCGTTAGCGCCGTTGATTTTGATGGGGAAATCGCAAGC GAGGAGCTTTGCTTTGGGGTTTGTGAAGGGTTTGATGGTGGGTGCGGGGAAAACAAGTGACGGGGTTAAGAAGGGGGTGGTGAATTTGCCGCGGTATTTA GCTCAAAAGGCTCCAGAGAAGGCGGAGCCTCGAGGGTTCGCAGTGGAGGCGATAATAGAGATTGTTAGAGTGATGGACGTAGAGCACCAAGTTGGGTTTG CTGAGTATGTGGTGAAAATGACACAAGGGAAGGCCAGTCTTAGGCTTTTGGGAGTGGATTTGATTTTGAATTTAATGATGTTGCTTAAAGATCCGTTTAT TGGAGTGGGTTTGGATTGTAAAGTGAAGGATTCGTGGGGTTTTAAATGTGTGGAGGCATTGATTCAGCGTTGCTCGGATTCGAGTTCTGGAATTCGAGCT CGTGCTTTGTCTAATTTGGCTCAGTTAGTGGGGTTTTTGTCAAGTGATGATAAGAATCATGATGTTTTGAAGGAAGTAACAGGATTTGGGGAAGTGGAGG TGGAAGTTGGGGTAAATGATATTTTGAGGAAAAGGTGCATGGATGAGAAGGCAAATGTTAGGAAGGCTGCACTTGTTTTGGTAACCAAGTTGAGTGCTAT TTTGGGTGGCAATTTTGATGGGGTTGTGCTCAAGACTATGGGCATGGCTTGTTCTGATCCACTTGTGAGCATACGTAAAGCCGCAATTTCTGCTCTGTCA GAGGCTTTCAGAACATTTTCAGATGAAAGTGTGATAATGGAGTGGCTACATTCTGTTCCACGATTAATAACAGATAATGAAAGTAGTATTCAAGAAGAAT GCGAGAACTTGTTCATGGAACTGGTTTTGGATCGCATTTCCAGAGCAGGACCTGAGGGTACCATACGCAACCAGACCACTTTCTCTGATTCCAATGTTAA AGCAAAAGATATAGAAAGGGAGATTGGGCTGCTCTTTCCAGGAATCTTGGTTCTTTTGAAGGAGATCTGCAATGGAGAGGTGACACCTTGGGTGAAGAAA ATCTGCACAAGCTTGGGTAAGAAGAAACGACTGAGGCCTAAAATTGCTATAGCATTACAGTACATCATAAAGACTTCTGAGTCTTATTGGGTGAGCAATT CCATGCCAATAGAGAAGTGGACAGCTCCACCTGGTGCTTGGTTTCTTCTATCAGAGGTGTCAGCGTACCTTTCAAAAGCTGTTGACTGGGAGTTTCTCCA TCATCACTGGCAGCTCCTTGATAAGTACAGAGCAGTAGGTGAGTTTAAGAGTCCATGTCCTAAAGAATTTATGCATGAAGATGAAGATGGCATAGAGTCC AGCTCTGTTGAATGGGTTAGCGATCGTGTTTTTCTCCTGCAAACAATCTCAAATGTTTCTGTTGAGCTGCCCCCTGAACCTGCAGCAGAGTTAGCTCATA ACTTGCTCATAAGAATTGAAGAGTTCAGCATGCATTCAACAGAGGTTAATGCTCATGTTAAAGCACTCAGAACCTTGTGCAAGCGGAAGGCTTTGGATGC TGATGAAGCTGAGAGTCTTGTCATCAAATGGGTACAGCAGCTTCTCTCTAAAGCTTCTCGGATCTTGGAGAAGTACATCACAGGAGATTCAGAAACAAAC AAGGGGGATGCTTTTTTCACACCTCCTAGAAGTGCGACTAGGAAGGGAAAGAGAGCTGCAGCCCTATCTAGATTGTTGTCAGAAGCAGTAACTGCAGTTT ATTCCATTGGGTTTTTAGTTATCATTTGTCCTTCAGCGGATACTAGCACCATTATTCCTCTACTACACACCATCATCACTTCAGGAAATTCTGATCCAAA ATTAAGTAAATTGCCAGGCCCTCAAGTCTCTCTGAAACAGACAGCTCCCTCTTTGTACATTCAAGCATGGTTAACAATGGGAAAGATTTGCTTAGCAGAC GAAGAACTTGCAAAAAGATATATTCCTTTGTTTGTGCAGGAGCTTGAAAAGAGTGACTCTGCAGCTCTTAGAAACAATCTTGTTGTAATGATGGCTGATT TTTGCATTCGCTATACTGCTCTAGTTGATTGTTACATATCGAAGATCACCAAGTGTCTCCGTGATCCATGTGAACTTGTGAGGAGGCAGACATTTATACT GCTTTCAAGATTGTTGCAGAGGGACTATGTGAAGTGGAGGGGAGTGCTCTTCCTTCGATTTCTTTTGTCACTAGTTGATGAGTCAGAAACGATAAGACAA TTGGCTGATTTCCTCTTTGGGAATATTCTAAAAGTCAAGGCACCGCTTCTAGCTTACAACAGTTTTGTGGAAGCTATTTTTGTTCTGAATGACTGTGATG CCCATAATGGGCATTGTGGTTCTAAAAGTTCACAAACAGAGAGCCATCTATTTTCCATCAGGGGTAATGATGAAAACTCAAGGTCTAAAAGAATGCACAT CTATGTTTCTTTGCTGAAACAAATGGCTCCCGAGCACCTCTTGGCAACATTTGCAAAGCTGTGTGCTGAGATTCTTGCAGCTGCATCAGATGGTATGCTC AAGTTGGAGGATGTCAGGGGACAGTCTGTTCTGCAGGATGCTTTTCAAATTCTTGCGTGCAAAGAGATCCGAATCCCATCAGGCCGTGGATCACAGACTG ATGCGGGAGATGTAGAGGAAGAAAGTGGAGATGGCGGAGTCTCTGCAGCAGCTGCCAAGAGAGGGGCCATAACTCAAGCAGTGAAGAAGGGTCTTATTCA AAATACCATCCCCATCTTTATAGAGCTTAAACGACTACTAGAAAGCAAGAACAGCCCACTTACAGGTTCGCTCATGGAATGTCTCCGGATTATTCTCAAG GATTACAAGAATGAGATTGATGAAATATTAGTCGCTGACAAGCAACTTCAGAAAGAGCTCATTTACGACATGCAAAAATACGAAACATCCAAGGCAAAAT CAGCAGCTGCCGTGGCTGTAGCCTCTATGCAAAACCATAGCAGCTTTCTTTCACCTGGGGCTTCTAAGACTGCAGGTGGAACAAAAGCTCAGGATAACTT AAATGAAAACCCGCAAAGTGATTCAAGAGTGGCATCGGCGATGGCAAATGCAGTTGCTGAAGCTAGAGTCAGGTCTGTGCTAAGAGAAGTTAACAGAGGA ATAGCAACACCACCACTTAGCTCCATTAGTAGGCCTAAACTCAAGCCAAACCAGGACGGTACTGGTGCTCGAACTGATCGTCCTCCGCATGTATTAGAAT CGCTGAGAAGGAGACAGAGTTTCTATTCTGATGACGAAAACTGA
AA sequence Show only first row Show all	>Potri.010G013300.3 pacid=42797552 polypeptide=Potri.010G013300.3.p locus=Potri.010G013300 ID=Potri.010G013300.3.v4.1 annot-version=v4.1 MEEEEDPTVCALITDLEETLNTQNQSQSLPFTLSTLQNLQSLLDSNDPQILSQFLSSLSSKSFSLSSLLPSLTSAMDSAPTHLSLLSSKIYLSLILFPNS PVFTLFNPISFLALLRSLRRAVKSPRCCPQEGNSSGVAKKRKGRKRGGIVACNNGGGDGDGGESEGGGEGFFDVRVFLCVIERLVFVLDLIHLDRFPDSL KCLVQTIVEILVLATSREMGGGFERLAGLCSKILCQVLKSEHGEEGETAAEVLKALAPLILMGKSQARSFALGFVKGLMVGAGKTSDGVKKGVVNLPRYL AQKAPEKAEPRGFAVEAIIEIVRVMDVEHQVGFAEYVVKMTQGKASLRLLGVDLILNLMMLLKDPFIGVGLDCKVKDSWGFKCVEALIQRCSDSSSGIRA RALSNLAQLVGFLSSDDKNHDVLKEVTGFGEVEVEVGVNDILRKRCMDEKANVRKAALVLVTKLSAILGGNFDGVVLKTMGMACSDPLVSIRKAAISALS EAFRTFSDESVIMEWLHSVPRLITDNESSIQEECENLFMELVLDRISRAGPEGTIRNQTTFSDSNVKAKDIEREIGLLFPGILVLLKEICNGEVTPWVKK ICTSLGKKKRLRPKIAIALQYIIKTSESYWVSNSMPIEKWTAPPGAWFLLSEVSAYLSKAVDWEFLHHHWQLLDKYRAVGEFKSPCPKEFMHEDEDGIES SSVEWVSDRVFLLQTISNVSVELPPEPAAELAHNLLIRIEEFSMHSTEVNAHVKALRTLCKRKALDADEAESLVIKWVQQLLSKASRILEKYITGDSETN KGDAFFTPPRSATRKGKRAAALSRLLSEAVTAVYSIGFLVIICPSADTSTIIPLLHTIITSGNSDPKLSKLPGPQVSLKQTAPSLYIQAWLTMGKICLAD EELAKRYIPLFVQELEKSDSAALRNNLVVMMADFCIRYTALVDCYISKITKCLRDPCELVRRQTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESETIRQ LADFLFGNILKVKAPLLAYNSFVEAIFVLNDCDAHNGHCGSKSSQTESHLFSIRGNDENSRSKRMHIYVSLLKQMAPEHLLATFAKLCAEILAAASDGML KLEDVRGQSVLQDAFQILACKEIRIPSGRGSQTDAGDVEEESGDGGVSAAAAKRGAITQAVKKGLIQNTIPIFIELKRLLESKNSPLTGSLMECLRIILK DYKNEIDEILVADKQLQKELIYDMQKYETSKAKSAAAVAVASMQNHSSFLSPGASKTAGGTKAQDNLNENPQSDSRVASAMANAVAEARVRSVLREVNRG IATPPLSSISRPKLKPNQDGTGARTDRPPHVLESLRRRQSFYSDDEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15890			binding (.1)		Potri.010G013300 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.018G021100 [exp]	2.82	0.7982	PKL.1
AT5G23910			ATP binding microtubule motor ...		Potri.015G146000 [exp]	3.46	0.7388
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G020200 [exp]	3.46	0.7631
AT5G46070			Guanylate-binding family prote...		Potri.004G049400 [exp]	8.36	0.7235
AT3G01516			unknown protein		Potri.001G349700 [exp]	9.21	0.6810
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	10.48	0.7671
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G146900 [exp]	10.95	0.6740
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	11.48	0.7490
AT3G05900			neurofilament protein-related ...		Potri.013G001150 [exp]	13.67	0.6987
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	16.88	0.7404

Compare expression of checked genes

Potri.010G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.