Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16630 1141 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G16060 575 / 0 ATP binding microtubule motor family protein (.1) AT1G18550 191 / 4e-51 ATP binding microtubule motor family protein (.1) AT3G49650 192 / 5e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 176 / 2e-45 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 176 / 4e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 170 / 8e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G28620 167 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65930 164 / 1e-41 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT2G37420 162 / 4e-41 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221400 [exp] 1429 / 0 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G223000 [exp] 736 / 0 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G182300 [exp] 594 / 0 AT3G16060 990 / 0.0 ATP binding microtubule motor family protein (.1) Potri.003G053800 [exp] 592 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.018G079800 [exp] 555 / 0 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.012G058400 [exp] 187 / 2e-49 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G150800 [exp] 177 / 1e-45 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G046700 [exp] 176 / 2e-45 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 175 / 5e-45 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023103 [exp] 1176 / 0 AT3G16630 1121 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10002876 [exp] 1173 / 0 AT3G16630 1127 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037546 [exp] 581 / 0 AT3G16060 994 / 0.0 ATP binding microtubule motor family protein (.1) Lus10011449 [exp] 565 / 0 AT3G16060 983 / 0.0 ATP binding microtubule motor family protein (.1) Lus10019245 [exp] 218 / 2e-60 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 216 / 7e-59 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 175 / 1e-44 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 174 / 2e-44 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010047 [exp] 171 / 1e-43 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 166 / 4e-42 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.010G013500.1 pacid=42798453 polypeptide=Potri.010G013500.1.p locus=Potri.010G013500 ID=Potri.010G013500.1.v4.1 annot-version=v4.1 ATGGGCGGCAAGATGCAGCAAACGAATGCTTCTGCTGCTTCCACCGCACTCTATGATCATGCCGCCGCCGGTGGTTCCTTGGGCCCCTCTGCTGATGCTG GTGATGCGGTCACGGCTAGATGGCTTCAGTCTGCCGGCTTGCAGCATCTGGCCTCTCCCTTGGCTTCTACTGGTATCGATCATCGCCTCCTTCCTCATAT TTTAATGCAGGGTTATGGAGCACAATCTGCTGAAGAGAAACAGAGGCTTTTCAAGCTTATGAGAAACCTCAATTTTAATGGAGAGGCTGTTTCTGAGCCT TACATCCCATCTGCCCAAACTTCAACTGGTGTGTCTGCCTCAGATGGCTTTTATTCTCCTGACTTTAGGGGGGATTTTGGAGCTGGCCTTTTGGATCTTC ATGCTATGGATGATACAGAACTTCTATCTGAGCATGCCATCTCAGAACCATTTGATCCATCACCATTGATGCCTGGTGTTTCAAAAGGATTTGAAAATGA CTTCAATTTGACTAGTAGCAGACAGCAAAGAGAGCAAACTGATGCAGATTTGTCAGTTCCATTCCCCACTAATGAAAAGGAGAACAGCACAAAGGAAAAT AACGTGGCAAAGATTAAAGTTGTGGTACGTAAAAGACCACTAAACAAGAAAGAGCTTGCTAGGAAGGAGGACGACATTGTAACGGTGTACGACAATGCTT TAGCTGTCCACGAACCCAGGCTAAAGGTGGACTTGACTGCATATGTTGAGAAGCACGAGTTCTGTTTTGATGCTGTTCTGGATGAGCGTGTCACCAATGA TGAGGTATATCGGGTTACTGTGGAACCAATTATTCCCACCATTTTTCAGCGAACAAAAGCCACATGTTTTGCATATGGTCAGACAGGTAGTGGTAAGACA TTCACAATGCAGCCGCTGCCTCTTAGAGCTGCTGAAGATCTTGTTAGATTGTTGCATCAGCCAGTTTATCGTAATCAGAGATTCAAATTGTGGCTTAGCT TCTTTGAAATATATGGTGGAAAACTCTTTGATCTTCTCAGTGAAAGAAAGAAACTTTGTATGAGAGAAGATGGCCGGCAACAAGTTTGCATTGTTGGATT GCAAGAATTTGAAGTTTCTGATGTACAAATTGTTAAGGAATTTATTGAGAAGGGGAATGCTGCCAGAAGTACAGGATCTACTGGTGCCAATGAGGAATCT TCAAGGTCACATGCTATTTTACAACTTGTTGTTAAGAAGCACAGTGAAGTAAAAGACTCCAGGAGGAACAATGATGTGAATGACTATAGAAGTGGAAAAG TGGTTGGGAAAATTTCATTTATTGATCTTGCTGGTAGTGAACGAGGTGCAGACACCACCGACAATGACCGGCAAACAAGGATTGAAGGTGCAGAAATCAA CAAGAGCCTTTTGGCTCTTAAGGAGTGCATTCGTGCTTTGGACAATGACCAGATCCATATACCATTCCGTGGGAGCAAACTCACAGAAGTACTCCGTGAT TCCTTTGTGGGCAACTCTAGGACAGTTATGGTCTCTTGCATTTCCCCAAATGCTGGCTCATGTGAACATACACTCAATACATTGAGATATGCGGATAGGG TTAAAAGTCTTTCTAAAAGCGGAAATGCAAGAAAGGATCAGGCTGTAAGTTCATTACCGCCAACTAACAAGGATGCTTCCTCTACATCATCACTGCCGGT CTCTGTTGATGTTGATGATGTTTATGAGCAACAAGAGGTCAGGGTGCCAGATATGGGTAGAAGGGTTGTAGAGAAAGAAACTCCATCTTACAATCCTACT GTTGATTATGATAAACAGCCCTCAAGTTTTCCATCAGGTTTTTCCTTAAATGAACGAGAAGAAAATGGGTTGAGTTCTGGCATAGCAGACAGGGAGAGGT TTGAAAGTAATAGTTCCTATGGTGGTTTGGCAAGTCAAAAAGTCAATTCATCATACACCCAGCACTCAGCTGATACAGAAGAGAAAGTGCCGAAGGTGTC TCCACCTCGCAGAAAAATATCCAGGGAGGAAAAGTCAGAAAAATTTGGAAACTGGTTGAAAAAAGATGGCAGTGGATCCGATCTCCCCACCGCAATCCCA AAGCTGCAGAATACAGGAAACTATAGTGCAAGTAACACTGGATCACGACAGTACAAACCGGACCCTCCTGTTGGGAATATAAATGCAATACTTGAGGAAG AAGAGGCCCTAATCGCTGCTCATAGAAAAGAAATTGAGGATACAATGGAGATTGTTCGTGAAGAAATGAAACTGTTGGCAGAAGTTGACCAACCAGGCAG TCTCATTGACAACTATGTAACCCAGTTGAACTTCGTGCTCTCACGCAAGGCAGCTGGCCTGGTTAGCCTCCAAGCACGCCTTGCTCGGTTCCAGCATCGA CTAAGAGAACAAGAGATACTTAATCGGAAGAGAGTCCCTCGTTAA
AA sequence Show only first row Show all	>Potri.010G013500.1 pacid=42798453 polypeptide=Potri.010G013500.1.p locus=Potri.010G013500 ID=Potri.010G013500.1.v4.1 annot-version=v4.1 MGGKMQQTNASAASTALYDHAAAGGSLGPSADAGDAVTARWLQSAGLQHLASPLASTGIDHRLLPHILMQGYGAQSAEEKQRLFKLMRNLNFNGEAVSEP YIPSAQTSTGVSASDGFYSPDFRGDFGAGLLDLHAMDDTELLSEHAISEPFDPSPLMPGVSKGFENDFNLTSSRQQREQTDADLSVPFPTNEKENSTKEN NVAKIKVVVRKRPLNKKELARKEDDIVTVYDNALAVHEPRLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKT FTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSFFEIYGGKLFDLLSERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEFIEKGNAARSTGSTGANEES SRSHAILQLVVKKHSEVKDSRRNNDVNDYRSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRD SFVGNSRTVMVSCISPNAGSCEHTLNTLRYADRVKSLSKSGNARKDQAVSSLPPTNKDASSTSSLPVSVDVDDVYEQQEVRVPDMGRRVVEKETPSYNPT VDYDKQPSSFPSGFSLNEREENGLSSGIADRERFESNSSYGGLASQKVNSSYTQHSADTEEKVPKVSPPRRKISREEKSEKFGNWLKKDGSGSDLPTAIP KLQNTGNYSASNTGSRQYKPDPPVGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSLIDNYVTQLNFVLSRKAAGLVSLQARLARFQHR LREQEILNRKRVPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	0	1
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.001G022700 [exp]	1.41	0.9548	ABI8.2
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.009G067100 [exp]	2.00	0.9571
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G079200 [exp]	4.24	0.9421
AT1G12500			Nucleotide-sugar transporter f...		Potri.001G114100 [exp]	5.09	0.9392
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G306200 [exp]	5.47	0.9476
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	6.32	0.9480
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	7.54	0.9497
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	8.12	0.9440	Pt-FLA14.7
AT2G16400	HD	BLH7	BEL1-like homeodomain 7 (.1)		Potri.002G031000 [exp]	8.48	0.9305
AT1G12000			Phosphofructokinase family pro...		Potri.011G015900 [exp]	9.53	0.9433

Compare expression of checked genes

Potri.010G013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.