Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15840 1028 / 0 BTB/POZ domain-containing protein (.1) AT1G21780 51 / 2e-06 BTB/POZ domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002874 [exp] 1254 / 0 AT4G15840 947 / 0.0 BTB/POZ domain-containing protein (.1) Lus10037522 [exp] 1254 / 0 AT4G15840 944 / 0.0 BTB/POZ domain-containing protein (.1) Lus10002873 [exp] 1063 / 0 AT4G15840 753 / 0.0 BTB/POZ domain-containing protein (.1) Lus10042583 [exp] 45 / 0.0004 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10041235 [exp] 44 / 0.0004 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 44 / 0.0007 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.010G014000.1 pacid=42796898 polypeptide=Potri.010G014000.1.p locus=Potri.010G014000 ID=Potri.010G014000.1.v4.1 annot-version=v4.1 ATGGCAGCAGCAGCAGCAGCATCGCAATATCCGAAAGAAGGAGAGGGTTCATACAGGATGGAAATGACAATTCAAACCTCAGACAATGACGGAACAAGCA CCGAACTCCGTGCACTCGACTGTAACCTCACCTCTCTCTGTGATCACATCCAAATCGAAGGTTTCAATTCAGGTTCTTTCTCCGATATCATCGTCCACGC CATGGGCTCCACCTACCACCTCCATCGCCTCATCCTCTCACGCAGCTCTTACTTCCGGAATATGTTGCATGGTCCATGGAAAGAAGCGAGCTCGCCTGTT GTTACATTAAAAGTGGATGATAAAAATGTGAATGCGGAGGCAATTGCTATGGCTTTGGCTTATTTGTACGGACATCACCCTAAGCTTAATGATATTAACG CCTTTCGCGTCTTAGCTGCGGCTTCATTTCTTGACCTTCAGGATTTGTGTGCAATTTGTACGGATTTTATTATTTCCGAATTGTGGACTTCGAATTTCTT GGCTTATCAGGTGTTTGCGGAGAGTCAAGATTATGGAATACACGGGGAACGTGTGAGAAATGCTTGCTGGGGTTACCTTTGTCAAAGTGGTGCGATTGAG TTGAAAGAGGTACTTCCAAAACTTTCCTCTCAAACTCTGCATGCATTACTGACTTCAGATGAACTGTGGGTATCTAGTGAAGAGAAACGGTTTGAACTGG CACTGTACACTCTTCTTGCAAAAGGTGCCTTTTGCAAGACTGAACATTCTGAGCAAGGAAGTCCCAGTGCTGAGGCGAACATGGATGTTCATTCTGACTC TTCGAAAGCAAAGGGAAAAAACTTGAGTGATAACTGCACTAGTAATGCATTGGAATCTGAACTTGGATGCTTAGCTCTAAAAGATGGCCTTGAGGGACAT GATGCTGCTCGTAATCTTCTGGTTGAGCTTGCTGATGGTGTGGGTGACTTCCAGCCAGGGGTTTCTGTTTCCAAACAACAGGCTCAACAAGCTGCGTACA CTCAATCGAATTTGGGGACACTACATCCTTGCGATATGGGACAATCTTCATCACTGAGCAACTCATTTTCAGTGATGAATGCAAATGGAACCTCATGTTC TTATGTAGAAATGCCAATCAGTGCTGGAACAAGTGGACTAGAATCTAGTGGAGTGGCTATGGAGGGGCCATCTGAAGACGGCTCATACCATTTGAATAAT AATAATTGGCTTGCAAGCAACCAATCTAGGAATTGCAATTCTCTAGACCCTTCCGGTAATGGGCTCATTCTCAATGATTGGGAAAGATGTGACATGCCTC AACTTTCATGGGGTGGTAGGGTTGTGGGCAGAAGACAGGTGAAAGGTTATGCTAAAGGGAACTGTGGAGTTCATAGGGAGGATTATGATACTTTCATCAA CATATTTGAAGGGGGTTCTCTTTTGTATTGCAACATGTCTTTTGAGGCACTTTTAAATGTAAGAAAGCAGCTTGAAGAGTTGGGTTTTCCTTGCAAAGCT GTGAATGATGGTCTTTGGCTGCAGATGCTTCTGAGCCAGAGGGTGCAGGAAATTGGTGCTGACACTTGTAAAATGTGCTGCCTAATGAGTATGGCATGCA CTTGCAGGCAGCCATTTGGGATTTCACATGTAGTTGCCACCACAGGTTATTACATGCAAGAGCATGAGCACCACAATTCTTCTGGGGGTGTGACTAATGT ATATGTTGCTGATTCTGGTCAAGGCGAGGGAAATGGCCTCTTTAGGCCAGTACGAGTGCATGTTAGGGGACCTATTGATGGGCTTGCAGGTATTGGGCGT GGAACTACATTTGTGCCAGCAGCTGCATGGCCCCCTACACGTTTTGTTTTCTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTGCCAGCAGTCTGTTG CTAGTGATGATTCGGAGAACAGAACTGACCACAATGGAGACCTATCAGGGGATGGGTTGACAGCTCTTGTTGGGTTAAGTCAAGGGGGGAGCAACTCGAC TATTCATGGAGAGCATATGGAAAGAGGATATGAAACAGATTTGCACGGAAGATTGTCTAAAACATCAGTTTCAGCACCGAGCACCAGTGGTATTGCTGTC CAGATGCTAGAATCACCAGAACATGCCATTGGATTTGAGTGGGAGAATGCAAACAACTCCATATCGCTAGATATGAAAACACCTTTAAGTCATTTCCCTC CATTTCGTTTTGGGGTTGAATTTGAGGATGTGCACAGGCTCAGTGATGGCCAAGTCAAGCACTCTCCGGAAATCTTTTATGCTGGTTCTCTCTGGAAGGT TAGTGTTCAAGCCTTTAATGATGAAGATCCTCAAGGACGTCGAACTCTTGGGTTGTTTCTTCACCGGAGGAAGGCAGAGATTACTGATTCCCTCAGAAAG GTTCATATATACGTGGACTCTCGTGAAAAGGTTACTGCTCGTTTTCAGCTGATTTGTCCATCAAAGAGAGAAGTAATGGTGTTTGGAAGACTCAAACAAA GGGGCACTCTTTTACCTAAAGCTCCTAAGGGATGGGGCTGGCGTGCTGCTTTGTTCTTCGATGAGCTTGCAGAGCAACTCCAAAATGGGACCTTGCGAGT GGCTGCGGTTGTGCAACTCGTGTGA
AA sequence Show only first row Show all	>Potri.010G014000.1 pacid=42796898 polypeptide=Potri.010G014000.1.p locus=Potri.010G014000 ID=Potri.010G014000.1.v4.1 annot-version=v4.1 MAAAAAASQYPKEGEGSYRMEMTIQTSDNDGTSTELRALDCNLTSLCDHIQIEGFNSGSFSDIIVHAMGSTYHLHRLILSRSSYFRNMLHGPWKEASSPV VTLKVDDKNVNAEAIAMALAYLYGHHPKLNDINAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAESQDYGIHGERVRNACWGYLCQSGAIE LKEVLPKLSSQTLHALLTSDELWVSSEEKRFELALYTLLAKGAFCKTEHSEQGSPSAEANMDVHSDSSKAKGKNLSDNCTSNALESELGCLALKDGLEGH DAARNLLVELADGVGDFQPGVSVSKQQAQQAAYTQSNLGTLHPCDMGQSSSLSNSFSVMNANGTSCSYVEMPISAGTSGLESSGVAMEGPSEDGSYHLNN NNWLASNQSRNCNSLDPSGNGLILNDWERCDMPQLSWGGRVVGRRQVKGYAKGNCGVHREDYDTFINIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKA VNDGLWLQMLLSQRVQEIGADTCKMCCLMSMACTCRQPFGISHVVATTGYYMQEHEHHNSSGGVTNVYVADSGQGEGNGLFRPVRVHVRGPIDGLAGIGR GTTFVPAAAWPPTRFVFSRVPFGMGNRNCQQSVASDDSENRTDHNGDLSGDGLTALVGLSQGGSNSTIHGEHMERGYETDLHGRLSKTSVSAPSTSGIAV QMLESPEHAIGFEWENANNSISLDMKTPLSHFPPFRFGVEFEDVHRLSDGQVKHSPEIFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSLRK VHIYVDSREKVTARFQLICPSKREVMVFGRLKQRGTLLPKAPKGWGWRAALFFDELAEQLQNGTLRVAAVVQLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15840			BTB/POZ domain-containing prot...		Potri.010G014000 [exp]	0	1
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.004G091000 [exp]	2.44	0.8167
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Potri.008G101200 [exp]	4.58	0.7919
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	6.85	0.8237
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	7.34	0.8154
AT1G02290			unknown protein		Potri.002G184000 [exp]	12.96	0.7610
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	17.32	0.8043
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	21.35	0.7364
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.018G107000 [exp]	24.24	0.7739
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	24.33	0.8117
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.001G417000 [exp]	25.69	0.7100

Compare expression of checked genes

Potri.010G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.