Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06920 1404 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 356 / 5e-107 PGR3 proton gradient regulation 3 (.1) AT5G59900 305 / 6e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 305 / 5e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 293 / 5e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 275 / 2e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 274 / 7e-81 RPF2 rna processing factor 2 (.1) AT1G62930 273 / 2e-80 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 272 / 3e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 271 / 3e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264800 [exp] 377 / 6e-115 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G105400 [exp] 328 / 2e-97 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123600 [exp] 317 / 2e-93 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 307 / 1e-90 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 299 / 1e-87 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 296 / 5e-87 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G025600 [exp] 291 / 9e-87 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 296 / 2e-85 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 287 / 3e-85 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043417 [exp] 1444 / 0 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 337 / 2e-100 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10038657 [exp] 292 / 1e-92 AT3G06920 328 / 4e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 307 / 4e-91 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 301 / 2e-88 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026747 [exp] 297 / 1e-85 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 290 / 1e-84 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 287 / 3e-83 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 286 / 1e-82 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 285 / 2e-81 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G014100.7 pacid=42799075 polypeptide=Potri.010G014100.7.p locus=Potri.010G014100 ID=Potri.010G014100.7.v4.1 annot-version=v4.1 ATGCTGTTGAGGAACCAGGGAATAGTATTGACTTACAATTCAAGGTGTTGGTACATTTTAATCAATTCAAGGAAGTTGGCTTCATTTTCTAATGGCCCTC CTTCAGATTCGGGTGGGAAATCTCATCTCTGTAATGAAGGGGTCAATCAAGAAAACTCGAGGAATTTTGATGGTGTGAGACGGGGAGTAGATGACGTGTG CCATGTTTTGGAAAGTGGTTCTTGGGGACCATCCCTTGAGAATTCTTTGTCAATGTTTAATGAAAAACCTCAACCTGAGTTGGTTATTGGAGTGTTAAGG AGGTTGAAAGATGTTAATCAAGCAGTGAATTATTTCCGTTGGGTCGAGAGGAAAAGTGAGGAACCACTTAGTCCGGAAGCTTATAATTCACTTCTTATGG TGATGGTTAGAACTAGGAATTTTGATTACTTAGAGCAGATTCTGGGAGAGATGAGTATTGCAGGATTTGGCCCTACTAATTACACTTGCGTGGAGTTAGT TGCGAGCTGTGTTAAATCACGGAAGCTTATAGAAGCTTTTGATCTCCTGCAAATGATGAGGCATTTTAAATTTCGCCCGGCGTTTTCTGCTTATACAACT TTGATCGGTGCTTTGTCTGAAGTAGGTGAATCTGATCGCATGCTTGCTCTTTTCAATCAAATGCAAGAGCTGGGTTACGAAGTGAATGTGCATTTGCTTA CGACTCTAATTCGTGTGTTTTCCAGGGAGGGTCGTGTTGATGCTGCTCTCTCCCTACTGGATGAAATGAAGAGCAACACTTTTGATGCTGATATTGTGCT TTATAATGTTTGCATAGACTGCTTTGGTAAGGTGGGAAAGGTGGATATGGCTTGGAAATTTTTTCATGAGATGAAGGCAAATGGTTTAGTGCCTGATGAT GTGACTTATACTAGCATGATGGGTGTTCTATGCAAAGCCAACAGACTTGATGAAGCCGTGGAGATATTTGAGCAGATGGAGCAAAACAGACAAGTTCCAT GTGCGTATGCTTACAACACCATGATTATGGGTTATGGATCAGCTGGAAAGTTTGACGAGGCATACAGTTTGCTTGAGAGGCAAAGGGCAAAAGGGTGCAT TCCAAGTGTGGTTGCGTATAATTGCATTCTTACTTGCCTTGGGAAGAAGGGAAAAACAGACAAGGCATTAAGAATTTTTGAGGAGATGAAGAGAGATGCA ATGCCCAATCTTCCAACATATAACATTATAATAGGCATGCTTTGCAAGGCTGGAAATGTCGAGGCTGCTTTCAAGGTTCGGGATGCCATGAAAGAGGCTG GCTTGTTTCCTAATGTCAGAACCATAAACATAATGATCGATAGGCTGTGTAAAGCTCAAAAGCTTGATGAAGCTTGTTCAATATTTGAAGGAATGGATCA TAAAGTTTGCTCCCCAGATGGTGCTACATTCTGTTCGCTTATAGATGGTTTGGGCAAGCAAGGTAGAGTGGATGATGCTTACAGGATTTATGAACGGATG CTGGATGCTGATCAAATTCCAAATGTTGTTGTTTATACATCCCTCATCAGAAATTTCTTCAAGTGTGACAGGAAGGAGGATGGTCACAAGATGTACAAAG AAATGATGCGTAGTGGATGTTCTCCTGACCTCATGCTCCTGAATACCTACATGGATTGTGTTTTCAAGGCTGGTGAAACTGAGAAAGGCAGGGCTTTGTT TGAGGAAATAAAGGCTCGAGGGTTTCTTCCTGATACAAGAAGCTATTCGATCCTAATCCATAGCCTTGTGAAAGCTGGTTTCGCACGGGAAACCTACGAG TTATATTATGCAATGAAGGACCAGGGCTGTGTTTTGGACACCCGTGCATACAACACTGTTATTGATGGGTTCTGCAAGTCAGGTAAGGTGAACAAAGCTT ATCAGCTACTGGAGGAAATGAAGACAATGGGCCACCATCCAACTGTTGTGACCTATGGTTCTGTCGTCGATGGCCTCGCTAAAATTGATAGACTTGATGA AGCATACATGCTCTTCGAGGAAGCAAAGTCGAATGGCATAGAGTTAAATCAGGTGATCTATAGTAGTCTTATTGATGGTTTTGGAAAAGTTGGTAGAGTT GATGAAGCATATCTAGTTATGGAAGAAATGATGCAGAAAGGTTTAACGCCCAATGTATACACATGGAATTGCTTGCTGGATGGATTGGTGAAAGCCGAGG AAATTAATGAGGCCCTTGTCTGCTTTCAGTCCATGAAAGACTTGAAATGCACTCCGAATCAGATAACTTATTGCATTCTCATAAATGGCCTCTGTAAGGT TAGGAAATTTAACAAGGCCTTTGTGTTTTGGCAAGAGATGCAAAAGCAGGGGTTAAAACCCAATACCATCACCTACACTGCCATGATCTCTGGACTTGCA AAGTCTGGAAATGTTGCACAGGCAAGTAGTCTATTTGAGAGATTTAGGGCAAGTGGGGGAATACCTGATTCTGCTAGTTATAATGCTATGATAGAAGGGC TGAGCATCGCAAATAGGGCTCTGGACGCATATCAACTTTTTGAGGAAACTCGGTTGAAGGGTTGCAGTATTCATACCAAGACTTGTGTTGCACTTTTGGA TGCACTGCATAAGGCCGAATGTCTTGAGCAGGCGGCAATAGTGGGGGCTGTTTTGAGGGAAACAGCAAAATCTCAACATGCTGTAAGATCTTGGTAA
AA sequence Show only first row Show all	>Potri.010G014100.7 pacid=42799075 polypeptide=Potri.010G014100.7.p locus=Potri.010G014100 ID=Potri.010G014100.7.v4.1 annot-version=v4.1 MLLRNQGIVLTYNSRCWYILINSRKLASFSNGPPSDSGGKSHLCNEGVNQENSRNFDGVRRGVDDVCHVLESGSWGPSLENSLSMFNEKPQPELVIGVLR RLKDVNQAVNYFRWVERKSEEPLSPEAYNSLLMVMVRTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTT LIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDD VTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA MPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDHKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERM LDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYE LYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRV DEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLA KSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAAIVGAVLRETAKSQHAVRSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	0	1
AT5G58210			hydroxyproline-rich glycoprote...		Potri.018G151900 [exp]	3.16	0.8424
AT1G20370			Pseudouridine synthase family ...		Potri.002G014400 [exp]	3.74	0.8743
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	4.69	0.8624
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	5.09	0.8342
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	6.00	0.8579
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	6.48	0.8320
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	9.21	0.8198
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	11.83	0.8507
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	12.64	0.8129
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	12.72	0.8537

Compare expression of checked genes

Potri.010G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.