Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02510 808 / 0 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT2G16640 559 / 8e-178 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT3G16620 537 / 6e-171 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT5G20300 421 / 1e-130 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT4G15810 98 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05000 94 / 3e-20 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 89 / 7e-19 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G02482 82 / 5e-18 chloroplast outer envelope GTP-binding protein, putative (.1) AT1G33950 51 / 2e-06 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT1G33830 46 / 6e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G225000 [exp] 1318 / 0 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 992 / 0 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131300 [exp] 545 / 6e-173 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131200 [exp] 549 / 1e-171 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 543 / 9e-170 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.006G063500 [exp] 430 / 7e-134 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 399 / 1e-122 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.002G183400 [exp] 99 / 3e-22 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.014G109400 [exp] 97 / 1e-21 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006048 [exp] 778 / 0 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 541 / 1e-169 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10028707 [exp] 381 / 4e-122 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10043414 [exp] 355 / 3e-108 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 357 / 2e-107 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10034170 [exp] 345 / 4e-102 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10027712 [exp] 335 / 4e-99 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10028706 [exp] 311 / 2e-89 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10027835 [exp] 269 / 1e-73 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10004619 [exp] 126 / 8e-32 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF04548 [poplar] [flax] AIG1 AIG1 family CL0023 [poplar] [flax] PF11886 [poplar] [flax] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Potri.010G014300.5 pacid=42797004 polypeptide=Potri.010G014300.5.p locus=Potri.010G014300 ID=Potri.010G014300.5.v4.1 annot-version=v4.1 ATGGCCTCAAAGATCCACGTCCCTGTTTCCACAACACAAGGAACCCCACCTTCACTACCATCACCTACAGGTTTTCTCCCTATCCGAGCTCCTATAACTG TTGATGATTTTCAATCAGATGGTTATAAAACTGACACCTCTGATAGCGACATTGGTAGTAGTCGTAGTGGTACTGGTAGTAATATTGATAATGGGTTTGT GAGTGGTGAAGAAGAGTTTGATTCTGCATCCGAGAGGCCTTTTTTGGGCGACCCAGATGAGGAAAACAGTGAAGAGGATGATTTTGGTGGCATGTATCGG GTTTCTAGGCCTTTTGTGGCTGACCCAGATGAAGAAATTTCAGTTCTTGAGGAGGTAGAGGAGGAGGAGAGTGGTGTAACTGATGAATTTATCCCTGTTG TTGGGTTGGACAGTGCGAATTCGAATGGAATTAGGCCTATTGCTCAGTTGTCAATGGATGATGATGAATTTGATAAGGTGACTGGTGATGAGGGAATGGT GAGTGAAGTGGACGATGGAAGCTTTTCAGGTGTTGTCAAAGTTCCTAGTTTTGGGGCTCAAGAGATTGTGGATGTTGCACCTCTAGTTAAGGTGCTGGAT ATTGAAGAAGATAAAGAAGATGGGTTATTGGTTCAGAGTAATTCTTCTTCTGATGACAACAAATCTAGGCTGTCAACGGAGAGGGATTTTGGAGCTGATA GTTGTGTTTTGGGTCCTAAAGATGCGGTTGTGACAAATGGTTCTGCTAATGACTCTGGTTCGGTGAAATTGGTCGAGGACAATGGTCATGTTGTAACAGT TACTCAGCCCACGAACTTGTGGGTGAATGGTGATTCTCCTGAAAACTCCGAAGGTGATAAAATGGAAGATGTGCGAGAAAGCAATACAAATTCCTCTGGT ATCAAAGATGAAGCAAACCGTGATTCAGAAACAATAGGAGGACAAAAAGGCTTACTTTCTCCTGAAAACTTCGAAGGTGATAAAATGGAAGATGTGCGAG AAAGCAATACAAATTCCTCTGGTATCAAAGATGAAGCAAACCGTGATTCAGAAACAATAGGAGGACAAAAAGGCTTACTTTCTCCTGAAAACTTCGAAGG TGATAAAATGGAAGAAGTGCGAGAAAGCAATACAAATTCCTCTGGTATCAAAGATGAAGCAAACCGTGATTCAGAAACAATAGGAGGACAAAAAGGCTTG CTTTCTTCTGAAAACTTCGAAGGTGATAAAATGGAAGATGTGCGAGAAAGCAATACAAATTCCTCTGGTATCAAAGATGAAGCAAACCGTGATTCAGAAA CAATAGGAGGACAAAAAGGCTTACTTTCTGATGATGACATTGAAGAGTTAATTTTTGGTGGCTCTGGAACAACCAAGCTCATCATGAATGAATTAGAGCA AAATTCAGCCTTCTCTTCCCCCCCAGGTATTGAAGCTTATCATGATCATCCGCAGACGATAGATGGAGAGATTACTATGGACTCAGATGAAGATACAGAC TCAGATGAAGAAGCAGACGAAGTTAGAGAGCCAGTAGGAAAACAGTTATTTGATTCTGCTGCATTTGCTGCTCTTTTAAAAGCAGCAACTGGTGCTGAAT TGGATGGAGGCAGAATAGCACTAAGCTCTGTTGATGGTTCTGGATTATTTTCTCTTGAAAATCCTGCTGGTTCAGGTTTCCAGTTTCGCACAAGGAGACA TGCTCCCCCACCAGATATGGTAAAGCGTACTTTAAGTGAAGAAGAAAAGAAGATTTTAGAGAAGATACAGCACATAAGGGTGAAGTTCTTGAGGCTTGTC CAGCGACTAGGACAGTCTCCTGAAGATTCTATAGTTGAATCAGTGCTACATCGGCTGGACCCAGATGAAGGGAGACGTGTTAGTCGAGAGTTTAGCCTTG AAACTGCTAAGAGTATGGCCATGCAGCTTGAAGCAGAGGGCAAAGATGATTTAAACTTCTCTTTGAACATTTTGGTTCTCGGGAAAACTGGAGTGGGGAA GAGTGCCACCATTAATTCTATTTTTGGTGAGAAGAGAGTTGAGATCAATGCGTTTGCACCTGCCACAACTAGGGTTAATGAGATTGTTGGAACAGTTGAT GGAGTTAAAATCAGAATCATCGACACACCAGGTCTCAGGTCCTCTGTAAAGGAAGAGGCTACCAACCGGAAAATACTAGCATCTGTAAAAAAGCTGATTA ACAAGTTTCCTCCAGATGTTGTCCTCTATGTTGACCGGTTAGACACCCATGATAGAGATCGCAATGATTTGCTGTTGTTAAGTTCGCTTTCCAGAACTCT AACTTCATCAATATGGAAAAATGCAATTGTCACTCTGACGCATGCCACTTCTCCTCCTCCTGATGGACCATCTGGGTCATCCCTAGCTTTTGAGGTGTAT GTTGCTCAACGATCTCATGTTATCCAGCAAGCAATCAGCCAAGCAGTTGGTGATTCGTACCTGATGCATCCGAGTATGAAGCATCCGGTGTCTCTTGTTG AGAATCATTCTTTGTGCCAGAAGAACGAGAACGGAGAAAATGTCCTCCCAAATGGACAAAGCTGGAGACCCCAATTATTACTGCTGTGTTACTCACTGAA GGTTTTGTCTGAAGCAAGTTCTATATCCAAGCCTCAAGATCTTATTGACCACAAGAAGCCTTTTGGTTTACGGCTCCGCTCTTTACCTCTACCCCACCTC GTGTCTTCTCTGTTGCATTCTCGCCCTCATCTAAAACTCCCTACTGATCTGGGTGATGAGGACATTGATTCAGACATGGACTTGGTTGACCTCCCTGATT CGGATGCAGAAGATGAGGATGAATATGACCAGCTTCCACCATTCAAGCCTTTGAGGAAATCTCAGGTTCAGAAGCTCAGCAAAGAGCAAAAGAAAGCTTA TTTTGAGGAGTATGATTATCGGGTGAAACTCCTTCTAAAGAAGCAGTGGAGAGACAATTTGAAAAGGCTGAAGGAGATAAAGAAGAGAGGCAAAGATTGC AGTAATGACATTGGGGAAGATGTGGACCAGGAAGATGAAGGTCCAGCACCAGTGCCTGTGCCTCTGCCTGACTTTGTCCTCCCACAATCGTTTGACAGTG ACAATCCTTCATACAGGTACCGAGCTTTGGAGCCTGCATCACAGTTTCTTGTCAGGCCAGTTTTGGATGCCCAGGGCTGGGATCATGATTGCGGATATGA TGGTGTTAACATCGAAAGTAATCTTGCTATTGCTGGTCAGTTTCCTGGTGCATTTACGGTTCAAATCACAAAAGATAAGAAAGACTTCAATATCCAATTA GATTCTTCAATTTGCGCTAAGCATGGAGAAAATGGATCAACTATGGTGGGATTCGACATCCAGACTATTGGAAGGCAGCTTGCTTATATCTTGCGAAGTG AGACCAAACTCAAAAAGTTTAAGATGAACAAATCATCAGCCGGGATATCTGTTACTCTACTAGGTGAAAATGTAGTCACTGGATTCAAGATTGAGGATCA GATTGCAGTTGGAAAGCGCTTGGCTTTGGTGGGAAATGCTGGCACTGTGAGATCAGGTAACGATACTGCCTATGGAGCCAACTTTGAAGTGCGGCTCAAG AGTAAAGATTTTCCTATAGAGCAGGACCAATCCACATTAGGTCTGTCCTTGATGAAGTGGAGGGGTGATTTAGGTCTGATGGCCCATTTACAGTCTCAAT TCTCCATTGGTCGGAATTCCAAAATGGCTGTCCATGTTGGAATGAACAATAAGCGAAGTGGCCAGATCTCCATCAAGACGAGCAGCTCGGAACTGCAAGC TGCACTTATTGGTATTGTGCCAATTGCAGTGTCCATCCTTCAGAGTATTTATCCTGGTTCTAATGCAGGATGCACAAATATACTAGATCATTGA
AA sequence Show only first row Show all	>Potri.010G014300.5 pacid=42797004 polypeptide=Potri.010G014300.5.p locus=Potri.010G014300 ID=Potri.010G014300.5.v4.1 annot-version=v4.1 MASKIHVPVSTTQGTPPSLPSPTGFLPIRAPITVDDFQSDGYKTDTSDSDIGSSRSGTGSNIDNGFVSGEEEFDSASERPFLGDPDEENSEEDDFGGMYR VSRPFVADPDEEISVLEEVEEEESGVTDEFIPVVGLDSANSNGIRPIAQLSMDDDEFDKVTGDEGMVSEVDDGSFSGVVKVPSFGAQEIVDVAPLVKVLD IEEDKEDGLLVQSNSSSDDNKSRLSTERDFGADSCVLGPKDAVVTNGSANDSGSVKLVEDNGHVVTVTQPTNLWVNGDSPENSEGDKMEDVRESNTNSSG IKDEANRDSETIGGQKGLLSPENFEGDKMEDVRESNTNSSGIKDEANRDSETIGGQKGLLSPENFEGDKMEEVRESNTNSSGIKDEANRDSETIGGQKGL LSSENFEGDKMEDVRESNTNSSGIKDEANRDSETIGGQKGLLSDDDIEELIFGGSGTTKLIMNELEQNSAFSSPPGIEAYHDHPQTIDGEITMDSDEDTD SDEEADEVREPVGKQLFDSAAFAALLKAATGAELDGGRIALSSVDGSGLFSLENPAGSGFQFRTRRHAPPPDMVKRTLSEEEKKILEKIQHIRVKFLRLV QRLGQSPEDSIVESVLHRLDPDEGRRVSREFSLETAKSMAMQLEAEGKDDLNFSLNILVLGKTGVGKSATINSIFGEKRVEINAFAPATTRVNEIVGTVD GVKIRIIDTPGLRSSVKEEATNRKILASVKKLINKFPPDVVLYVDRLDTHDRDRNDLLLLSSLSRTLTSSIWKNAIVTLTHATSPPPDGPSGSSLAFEVY VAQRSHVIQQAISQAVGDSYLMHPSMKHPVSLVENHSLCQKNENGENVLPNGQSWRPQLLLLCYSLKVLSEASSISKPQDLIDHKKPFGLRLRSLPLPHL VSSLLHSRPHLKLPTDLGDEDIDSDMDLVDLPDSDAEDEDEYDQLPPFKPLRKSQVQKLSKEQKKAYFEEYDYRVKLLLKKQWRDNLKRLKEIKKRGKDC SNDIGEDVDQEDEGPAPVPVPLPDFVLPQSFDSDNPSYRYRALEPASQFLVRPVLDAQGWDHDCGYDGVNIESNLAIAGQFPGAFTVQITKDKKDFNIQL DSSICAKHGENGSTMVGFDIQTIGRQLAYILRSETKLKKFKMNKSSAGISVTLLGENVVTGFKIEDQIAVGKRLALVGNAGTVRSGNDTAYGANFEVRLK SKDFPIEQDQSTLGLSLMKWRGDLGLMAHLQSQFSIGRNSKMAVHVGMNNKRSGQISIKTSSSELQAALIGIVPIAVSILQSIYPGSNAGCTNILDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014300 [exp]	0	1
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	2.00	0.9098
AT3G63390			unknown protein		Potri.002G047400 [exp]	3.87	0.8995
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	4.24	0.8785
AT5G47360			Tetratricopeptide repeat (TPR)...		Potri.001G154901 [exp]	4.35	0.9109
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.014G167800 [exp]	8.00	0.8789
AT3G22430			unknown protein		Potri.008G152900 [exp]	8.94	0.8904
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.004G186500 [exp]	16.00	0.8919
AT1G65070			DNA mismatch repair protein Mu...		Potri.004G041900 [exp]	16.24	0.8548
AT1G36390			Co-chaperone GrpE family prote...		Potri.002G090000 [exp]	16.91	0.8604
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	17.32	0.8611	Pt-KUP3.1

Compare expression of checked genes

Potri.010G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.