Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21480 366 / 5e-109 BRCT domain-containing DNA repair protein (.1) AT4G03130 247 / 7e-69 BRCT domain-containing DNA repair protein (.1) AT2G41450 71 / 3e-12 N-acetyltransferases;N-acetyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135520 [exp] 357 / 4e-107 AT4G03130 284 / 2e-83 BRCT domain-containing DNA repair protein (.1) Potri.006G045100 [exp] 84 / 4e-16 AT2G41450 487 / 2e-167 N-acetyltransferases;N-acetyltransferases (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037907 [exp] 401 / 8e-122 AT3G21480 323 / 3e-94 BRCT domain-containing DNA repair protein (.1) Lus10038633 [exp] 396 / 6e-120 AT3G21480 317 / 5e-92 BRCT domain-containing DNA repair protein (.1) Lus10033984 [exp] 377 / 8e-113 AT3G21480 301 / 3e-86 BRCT domain-containing DNA repair protein (.1) Lus10012790 [exp] 143 / 1e-36 AT3G21480 112 / 1e-26 BRCT domain-containing DNA repair protein (.1) Lus10012794 [exp] 130 / 4e-33 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G014700.1 pacid=42797862 polypeptide=Potri.010G014700.1.p locus=Potri.010G014700 ID=Potri.010G014700.1.v4.1 annot-version=v4.1 ATGGGTTCTCTTGGAGACGATGACGATGGTGAAATTAAAGCAGGGAGAGAAGACCCAAATGCCAATTTCGCCCCTTCTTATACCCAACCCTTTGATTCTC AATTTTTGCCCTCTCCATTGCCTGGTGAAAAAGGTGAGGATGCCAATGAGCTGCAATTTTTACAAAGTACTATGCTTTTTGAGGATACTGTTAGAGTTGA AGATGCATTTGAGACCCAAGTAGTGGATCTTGGTGGTGAAACACAAGCGTTGGATGACCTCGATTGGTTTCAGAATGTGGACACCCAATTGATAGATGAG ATCATTGATAGTGATGGTGAAGGAACAGATAGAACTGAAGTTTTGGATGATGGTAATGAGCTCTCTGATGATGAATCTGGAAGAAGAGGCAAATGTGAAT CATTGGATGGGGAGAAGATTCAAGACACCTCTCTTTCCAAACATGGTGAGAAGGGATTGGTGGAGCAGTCTGATGCTTTGACCGATGAACAGCATTTATC AGGATCTGCCCTGAAGTATACTTCAGTTCGTGTAGAGTCCTTGCGGGTCTCTGGTATAGCAGCTCGCAGTAGTGCTTCAAATGGAACCAACAACAGTGAC TCATGTTCTCTTGTGACTGATGGTCAGATTTCAGAACAATTTACTGTTAACACTAACAGGTCAAAAACAAAAATTCCAGAGGAAGTTGTTTGGAGGCATG ATATGTGGAGATCTGATGATGAAGTGAAGGAATTTAGTAATGGAAGCAGGTGTAATATTGGTTGTTCTGCAATGAGAAAACTCTTCGCTGAGAATTCCTT TATTGAAACCAAAGGACATTTTGTAGGAGGAAAAGAGGTCCCCATTTGTGATGATGGGGTGGCAGGGTTAAGCTATATTGATTCCCAAGAACCAGGAGAT TTGTCACAAGCCGATGCGCTTTTATGTGTGCAAAAGTTAATTGAAGAGAGCAAGGTATTGTTTGATGAAGTTGACCTGGGGAAAATTGACAGGAGAAAGT CAAGTCACATTTCAGCTGCGAAGGGGGTTCAAAGTTTGGCCAAGAAAACCACTGATGGAGGCACCAAGGGAAAAAGCAGGATTTTTGACTGGGATGACGG ACTCGAGGACGAGGGAGGAGGAGATATTTTCCGCCGAAGAAAGGAAATGTTTTTTGGTACTGCAAACCTTGGGAAGAGATCCTTTATGAAACCCTCAAAA TCCAAAGGAAATCAGTTGGGTGTATGCAGGGACAACGAGGGAAAATCAAATGTCCAGAATGTAATAGAGGTTCACTCTGAGTCAAAAATAGATTTGTGTA GTCTAAGAGCTAATAAGAAGATGATGCAAGAAACTGAAACGAATGTTAGTAGGAATCTTTTTAATAAGTTTGATGAACAACCTGAAGCGGATGCATCAGC AGGACAGTTGGAAGCTCTTACTAGGAAGGAGGTTCCAGAAATGCTAGATATAGGTTTGGACACTCAAATGGCTGCTGAAGCTATGGAAGCGTTATTCCAT GGGGAGGGCATTGCTTATGATGCTACTAATGATGGCCAGCAGATTCCAGCAGTTAATTCCAAGGATCTTATGGAAGGATCACTGAGAAGTAAGGCTAAGA AGAGCATCCATTCAAAGCAACATTCTCTTAGCAACAATGAGGATATTGGAGTTACCACACATCAATCGAAGAAAACATTGAAGATTAGTGCTAAACTAGG TAAACAATCTTTAACTCCATCACAAAAATGTCCTGAAAATGTCAGAAAGCAGTGTGATAAGGATGTAGTAATGACTAGAAGTAAGAGGGCCAGGTCAGAT GCTGGACTTGATGAGTTGGATAGATGTAATGGAACTGCTTCAAGGGGTCATCGCTCAGTTAAGAAACAAGATTTACCAGTGGAGCTTGCTACTTCAACAC CAGTCGCTCACCGGACCAGGCAGTCATTGGCAGTTTCTAAATTGAAAAGTGCTGAGAATGTGTCCATTGATAATAGAGAAAAACCCAACAGCCAGGTTGA GTTGGGTGGTCGTGAGTGGCATAAAGCTGGTGTGGTAGATGTTGAGGCATCTGAAGTGTTGAATGCTAAAGGGAACTCATCAGGATTGGGTTCTAGTCAA CCCGGAGAACCTAAAACTTCCAAATCAAGATTGCTAGCTACAGACAATTATATCAGTTTTCCCAGAAGAAAAAGATCTCGTCAAAACTTGTCAGGTCAGC TTGATGATCCCCATAACTTACATGCTCAATCCAAACCATCTTGTCAGCCAGGAATTAGCACTGATTTAAACATGAAGAAGAAAACCAGATCATCCATATC TGTTTGCCCAGATTTGTCACCTCAACATGTTCATAAACCAGGCATAGATGGCACTACTTGTAATTATAATTCTGTTGATATGAATGGGAAGATGTCTAAC AATCTAATGGGAGTGGGTGCTTCAGTAAAATCCTCTCACAGAAGAAGCAATGCAGATTCCTCACCATCAGCTGCAAATGAAGTGAATGTGCCAAGTTCAG ATAATTTGTCAAGGGAGAAAACAAAATCTTACGAATCAGCATGTGCTTCTCCTGGTATCTGTATGACGCCTGTGAATGCTGCATCACCTGTTTGTATGGG CAGTGAATATAAGCAATCATGCAGGAAGAACCTGTCAAGAGCATGCCTTGTGAAAGAAATGAGTAGTCTATGTGCTGCATGGACAGGACCTATTTCTGAA CCAAAAGATACAAGGAAGAGAAGAGATTTGTCTGATGTTCGAGTCCTTTTCAGCCATCACCTGGATGAGGACATACTTAAGCAGCAGCGAAAGATAGCAG ATCGACTTAAAGTTTCAATAGCTTCCTCCATTACAGATGCGACACACTTTGTTACTGATAAATTTGTGCGGACAAGGAATATGTTGGAAGCTATTGCTTC TGGAAAACCAGTGGTCACACATTTATGGCTTGAGAATGTTGGACAAGCTAACTATTACATTGACGAGCAAAAGTACATAGTAAGAGACTCAAAAAAGGAA AAGGAGTTCGGCTTTAACTTAGCAGTTTCATTGGCACATGCGCGCCAGCATCCGCTTTTACAAGGTCGAAGAGTTTTGATCACTCCTAAGACAAAGCCGG GCAAAGAAATAATTTCCAGTTTGGTCAAAGCAGTTCGTGGCCAGGCAGTGGAGAGAGTTGGCAGATCCACTCTAAAGGATGATGTAGTCCCAGATGATCT GTTAATTTTGTCTTGCGAAGAAGATTATGAAGTCTGCGTACCTTTCCTTGAAAAAGGGGCTGCTGTCTACAGTTCAGAGCTGCTGCTGAATGGAATTGTT ACTCAGAAGCTGGAATATGAAAGGCACCGGCTCTTTGCAGACACTGTCAAGAGAACTCGTTCTACGGTATGGATGAAAAAAGATGGCCACAATTTCGTTC CCGTGACAAAGCGTAGATAG
AA sequence Show only first row Show all	>Potri.010G014700.1 pacid=42797862 polypeptide=Potri.010G014700.1.p locus=Potri.010G014700 ID=Potri.010G014700.1.v4.1 annot-version=v4.1 MGSLGDDDDGEIKAGREDPNANFAPSYTQPFDSQFLPSPLPGEKGEDANELQFLQSTMLFEDTVRVEDAFETQVVDLGGETQALDDLDWFQNVDTQLIDE IIDSDGEGTDRTEVLDDGNELSDDESGRRGKCESLDGEKIQDTSLSKHGEKGLVEQSDALTDEQHLSGSALKYTSVRVESLRVSGIAARSSASNGTNNSD SCSLVTDGQISEQFTVNTNRSKTKIPEEVVWRHDMWRSDDEVKEFSNGSRCNIGCSAMRKLFAENSFIETKGHFVGGKEVPICDDGVAGLSYIDSQEPGD LSQADALLCVQKLIEESKVLFDEVDLGKIDRRKSSHISAAKGVQSLAKKTTDGGTKGKSRIFDWDDGLEDEGGGDIFRRRKEMFFGTANLGKRSFMKPSK SKGNQLGVCRDNEGKSNVQNVIEVHSESKIDLCSLRANKKMMQETETNVSRNLFNKFDEQPEADASAGQLEALTRKEVPEMLDIGLDTQMAAEAMEALFH GEGIAYDATNDGQQIPAVNSKDLMEGSLRSKAKKSIHSKQHSLSNNEDIGVTTHQSKKTLKISAKLGKQSLTPSQKCPENVRKQCDKDVVMTRSKRARSD AGLDELDRCNGTASRGHRSVKKQDLPVELATSTPVAHRTRQSLAVSKLKSAENVSIDNREKPNSQVELGGREWHKAGVVDVEASEVLNAKGNSSGLGSSQ PGEPKTSKSRLLATDNYISFPRRKRSRQNLSGQLDDPHNLHAQSKPSCQPGISTDLNMKKKTRSSISVCPDLSPQHVHKPGIDGTTCNYNSVDMNGKMSN NLMGVGASVKSSHRRSNADSSPSAANEVNVPSSDNLSREKTKSYESACASPGICMTPVNAASPVCMGSEYKQSCRKNLSRACLVKEMSSLCAAWTGPISE PKDTRKRRDLSDVRVLFSHHLDEDILKQQRKIADRLKVSIASSITDATHFVTDKFVRTRNMLEAIASGKPVVTHLWLENVGQANYYIDEQKYIVRDSKKE KEFGFNLAVSLAHARQHPLLQGRRVLITPKTKPGKEIISSLVKAVRGQAVERVGRSTLKDDVVPDDLLILSCEEDYEVCVPFLEKGAAVYSSELLLNGIV TQKLEYERHRLFADTVKRTRSTVWMKKDGHNFVPVTKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21480			BRCT domain-containing DNA rep...		Potri.010G014700 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	4.58	0.8338	NPH4.1
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	6.00	0.8305	SDG906,SUVH3.3
AT1G13120		EMB1745	embryo defective 1745 (.1)		Potri.008G183500 [exp]	6.00	0.8341
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.006G128700 [exp]	7.61	0.7756
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.010G177400 [exp]	7.74	0.7903
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	9.21	0.7918
AT5G58160			actin binding (.1)		Potri.018G108000 [exp]	10.19	0.7956
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	13.03	0.8013
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	13.85	0.8200
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	14.96	0.7940

Compare expression of checked genes

Potri.010G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.