Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06330 409 / 1e-140 RING/U-box superfamily protein (.1.2.3) AT5G18760 357 / 1e-120 RING/U-box superfamily protein (.1) AT5G60580 210 / 8e-63 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 192 / 3e-56 RING/U-box superfamily protein (.1.2) AT3G09760 188 / 2e-54 RING/U-box superfamily protein (.1) AT5G59000 54 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 55 / 9e-08 RING/U-box superfamily protein (.1.2) AT4G32670 54 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 52 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 51 / 4e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014950 [exp] 820 / 0 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 667 / 0 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.016G022900 [exp] 231 / 1e-70 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 229 / 4e-70 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 222 / 5e-67 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 209 / 3e-62 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.008G062600 [exp] 54 / 4e-08 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G304100 [exp] 55 / 9e-08 AT4G34100 1553 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G099400 [exp] 54 / 1e-07 AT4G34100 1607 / 0.0 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012791 [exp] 471 / 7e-165 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 459 / 6e-155 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 393 / 2e-134 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10037906 [exp] 270 / 6e-86 AT3G06330 232 / 1e-71 RING/U-box superfamily protein (.1.2.3) Lus10022585 [exp] 229 / 5e-70 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 224 / 7e-68 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10012793 [exp] 211 / 1e-65 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3) Lus10026501 [exp] 216 / 2e-64 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10037410 [exp] 211 / 9e-63 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 212 / 3e-60 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.010G014800.1 pacid=42798876 polypeptide=Potri.010G014800.1.p locus=Potri.010G014800 ID=Potri.010G014800.1.v4.1 annot-version=v4.1 ATGCAAGCAACTCAGGCAGTACTCAACAATGGAGTTGCTGAAGGTTCTCCAGTAGAGGCTGATTCCAAAATTGTGGAACCCTCAAATGAAGTCTCAAATC CAGAACCAAGTGGAAGGCGCTCGGATCTTTCACTTCAAATTCCTCCTAGACATGTAGGTTTTGGCACTAGCCATAGTGGAAAAGGTTTACTCCACTCTCA AAATTCATATAAAGGCAGATCACCAGGAGGCTTCTTGCGGACTCTCAGCTTGAAGAAAAAAGCTGCTGCTCCTGATGGTGAGAGGAGCTCTCTCCTTACT GCAGACTACAAAACAGCTCCAGATAGTCCTATTATGGCCAGCTTCAAGTCAGCATTTTCTTGGAACAGATGCACTTCTCTTCCTGTTACACCTGCATCGA AATTGTCCCCTTCTGTTTCCATGCCTGCTTCAGCAATAATGCCTGGTGAATCTCATAAAATAAAAAAGGGGGCTGCTCATCCTGTGGTTTCAAGGTCCCT CTCTGTGCCTTGGCGAAATGTTGTTATTGTACGATCTGCATCTTTCTCTACTCGCGATGAGCATGTTCTAACAGATCCCAGTAATGCAGATCAAATAACG CCTATTCCCACTGAAGTCGATGATGAAGAAATTCCTGAAGAGGAAGCTGTATGTAGGATCTGTTTTGATGTATGTGAAGAAGGGAATACACTCAAAATGG AATGCAGTTGTAAAGGTGCCCTCAGACTTGTACATGAAGACTGTGCAATTAAGTGGTTTAGCACCAAAGGAAACAAGAACTGTGATGTATGTGGGCTAGA GGTTAAGAACTTACCGGTAACTTTGCTTCGGGTAACAAGCGCAGCCCATAGAAATAACAGACAGGAACAGAGTCACCAGATGTCACAGTCAATAAGTGCC TGGCAGGACTTTGTTGTGCTTGTCTTAATTAGCACCATATGCTATTTCTTCTTCTTGGAGCAATTATTGATTCATGACATGAAGACTCAAGCAATTATAG TTGCTGCACCATTTGCATTCACGTTGGGCCTTTTGTCATCTATCTTTGCTGTCATTCTAGCAATCAGAGAGTATATATGGACATATGCTGCACTTGAGTT TGCGTTTGTGGCCATTACTGTCCACCTATTCTACAATATGCTTCATGTGAAGGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTCGGGATAGCT ATGAGCATCAACTCGTTGTACATTCAATATTTTGCTTGGCGAGTTCAGGTTGGCCAGAACCACAACTCGAACCCAAACTCGAATCCAGTATGA
AA sequence Show only first row Show all	>Potri.010G014800.1 pacid=42798876 polypeptide=Potri.010G014800.1.p locus=Potri.010G014800 ID=Potri.010G014800.1.v4.1 annot-version=v4.1 MQATQAVLNNGVAEGSPVEADSKIVEPSNEVSNPEPSGRRSDLSLQIPPRHVGFGTSHSGKGLLHSQNSYKGRSPGGFLRTLSLKKKAAAPDGERSSLLT ADYKTAPDSPIMASFKSAFSWNRCTSLPVTPASKLSPSVSMPASAIMPGESHKIKKGAAHPVVSRSLSVPWRNVVIVRSASFSTRDEHVLTDPSNADQIT PIPTEVDDEEIPEEEAVCRICFDVCEEGNTLKMECSCKGALRLVHEDCAIKWFSTKGNKNCDVCGLEVKNLPVTLLRVTSAAHRNNRQEQSHQMSQSISA WQDFVVLVLISTICYFFFLEQLLIHDMKTQAIIVAAPFAFTLGLLSSIFAVILAIREYIWTYAALEFAFVAITVHLFYNMLHVKAIYAILLSSVLGFGIA MSINSLYIQYFAWRVQVGQNHNSNPNSNPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06330			RING/U-box superfamily protein...		Potri.010G014800 [exp]	0	1
AT3G06330			RING/U-box superfamily protein...		Potri.010G014950 [exp]	1.00	0.9688
AT4G19950			unknown protein		Potri.007G105700 [exp]	21.44	0.7371	ORF.6
AT3G22260			Cysteine proteinases superfami...		Potri.006G021700 [exp]	33.76	0.6626
AT2G22420			Peroxidase superfamily protein...		Potri.005G072800 [exp]	174.92	0.5980

Compare expression of checked genes

Potri.010G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.