Plant FIBer expression Database

Potri.010G015100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041251
[exp]
47 / 2e-07 ND /
PFAM info
Representative CDS sequence
>Potri.010G015100.1 pacid=42799146 polypeptide=Potri.010G015100.1.p locus=Potri.010G015100 ID=Potri.010G015100.1.v4.1 annot-version=v4.1
ATGGACAACAAGAAGAGACCACTACTGGACGTGTCTTCCTTTCTTCTGGTCGAGGGCAGTGCAGACTCTGAGGCAGAATATGGGCTTCTGAAGCTCTATC
TCGATGTTACTATAGCCTGTGCTGCTGCTGCTGCTGATGATGATGATGCAGAGTCATGCAGCTGTGACACAACTGATCGTATACATGGTTTTTCTGAAAC
TTTTGAGGTTGATGATCATCGCGAGCCAAGTTGGAGTGGCTGCAAGATGTTTCTAAAGGATGCCGCCTTGGACTGCATGATCATTGAGGAGGGTGATCAA
GAGGAATCAAAGGTTGATATTAATCTAAGTAGAGAGGTCATGGATGCAATGGAGGACAGACTCTTTTGGGAGACTTGCATCGCGCTAGGGTACCCTTAA
AA sequence
>Potri.010G015100.1 pacid=42799146 polypeptide=Potri.010G015100.1.p locus=Potri.010G015100 ID=Potri.010G015100.1.v4.1 annot-version=v4.1
MDNKKRPLLDVSSFLLVEGSADSEAEYGLLKLYLDVTIACAAAAADDDDAESCSCDTTDRIHGFSETFEVDDHREPSWSGCKMFLKDAALDCMIIEEGDQ
EESKVDINLSREVMDAMEDRLFWETCIALGYP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G015100
[exp]
0 1
AT4G32870 Polyketide cyclase/dehydrase a... Potri.006G237100
[exp]
1.41 0.9176
AT3G15518 unknown protein Potri.001G404500
[exp]
2.82 0.8978
AT3G22740 HMT3 homocysteine S-methyltransfera... Potri.008G155900
[exp]
5.00 0.8930 HMT3.1
AT5G43150 unknown protein Potri.003G187500
[exp]
6.24 0.8475
AT3G53980 Bifunctional inhibitor/lipid-t... Potri.016G104300
[exp]
6.92 0.9146
AT1G23380 HD KNAT6S, KNAT6L,... KNOTTED1-like homeobox gene 6 ... Potri.010G043500
[exp]
8.36 0.8831
AT3G28960 Transmembrane amino acid trans... Potri.008G086500
[exp]
10.81 0.9005
AT5G65660 hydroxyproline-rich glycoprote... Potri.002G108100
[exp]
14.28 0.7866
AT4G09890 Protein of unknown function (D... Potri.007G077500
[exp]
16.43 0.8769
Potri.016G098300
[exp]
17.49 0.8928

Potri.010G015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.