Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 1228 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 1009 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 724 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 57 / 2e-08 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 44 / 0.0004 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196500 [exp] 1367 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 1026 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 1021 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 801 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 765 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.001G061400 [exp] 57 / 1e-08 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 57 / 2e-08 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.002G146300 [exp] 46 / 9e-05 AT2G45290 1180 / 0.0 Transketolase (.1) Potri.017G076500 [exp] 45 / 0.0001 AT2G34590 671 / 0.0 Transketolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012789 [exp] 1291 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 1209 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 1009 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 1008 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 1004 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 1002 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 993 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 991 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10013117 [exp] 754 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10008084 [exp] 748 / 0 AT5G11380 960 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF02779 [poplar] [flax] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [poplar] [flax] TKC_like PF02780 [poplar] [flax] Transketolase_C Transketolase, C-terminal domain CL0254 [poplar] [flax] THDP-binding PF13292 [poplar] [flax] DXP_synthase_N 1-deoxy-D-xylulose-5-phosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.010G015200.1 pacid=42797367 polypeptide=Potri.010G015200.1.p locus=Potri.010G015200 ID=Potri.010G015200.1.v4.1 annot-version=v4.1 ATGGCCCTCTCTGCATTTTCTTTCCCTGCTCATGTCAATAGCGTCACAAGTTTAGAGCACCCTCAAAAGTTTAGTCTTCTGTCTTCTCATTTCTTATGGA GAACAGATCTGCTGTCCCAATCTTTAGACAAGATCAATCAGATACATGTCAAGAAAAGGGCAAATGGGATTTGTGCATCACTATCAGAAAGAGGAGAGTA TCATTCACAGAGACCTCCAACGCCTCTCTTGGACACCATAAACTATCCAATTCACATGAAAAATCTATCTGTCAAGGAGCTAAAACAACTAGCAGATGAG TTGCGGTCCGATGTTATCTTCAATGTTTCTAAAACTGGGGGTCACTTAGGTTCTAGCCTTGGTGTTGTGGAGCTTACTGTGGCTCTTCACTACGTTTTTA ATGCCCCTCAAGACAAGATACTATGGGATGTTGGCCATCAGTCTTACCCTCACAAGATCCTGACTGGGAGAAGAGACAAGATGCATACAATAAGACAGAC TAATGGATTAGCTGGTTTTACAAAGCGGTCAGAGAGTGAATATGATTGTTTTGGCACTGGTCACAGCTCTACCACCATTTCGGCTGGCTTGGGAATGGCT GTGGGGAGAGATTTAAAAGGAGGGACGAACAAGGTAGTCGCCGTTATAGGTGATGGAGCCATGACAGCAGGACAAGCTTATGAAGCGATGAACAATGCAG GGTACCTAGACTCTGATATGATTGTTATTCTTAATGACAACAAACAAGTTTCTTTACCAACTGCCAACTTAGATGGGCCGATACCACCTGTAGGAGCCTT GAGCAGTGCTCTCAGTAGGCTGCAATCAAACAGGCCTCTCAGAGAACTAAGGGAGGTTGCTAAGGGAGTTACAAAACAAATCGGGGGACCAATGCATGAA TTGGCAGCAAAGGTTGATGAATATGCTCGTGGAATGATCAGTGGTTCTGGATCAACCCTCTTTGAAGAGCTTGGTCTCTACTATATTGGCCCTGTTGATG GGCACAATATCGATGATCTTATTGCCATTCTAAAAGAGGTTAAGAGTACAAAAACAACAGGTCCAGTCCTGATTCATGTTGTCACTGAGAAAGGTCGGGG GTATCCATTTGCCGAGAGAGCTGCTGACAAGTACCATGGAGTGGCCAAGTTTGATCCCGCAACTGGAAAGCAGTTCAAGGCAAGTCCTAGCACACAGTCT TACACAACGTATTTTGCAGAGGCTTTAACTGCAGAAGCAGAGGCAGACAAAGATATTGTTGCAATTCATGCTGCCATGGGAGGAGGGACAGGCTTAAATC TCTTCCTTCGCCGTTTTCCAACAAGATGTTTTGATGTGGGGATCGCAGAACAGCATGCTGTTACTTTTGCTGCAGGACTTGCCTGTGAAGGTCTTAAACC TTTTTGTGCAATCTACTCGTCTTTCTTGCAGAGGGCATATGACCAGGTGGTACATGATGTAGATTTGCAGAAACTTCCAGTAAGATTCGCAATGGACAGA GCTGGGCTGGTTGGAGCAGATGGTCCCACACATTGTGGAGCTTTTGATGTCACTTTCATGGCATGCCTCCCCAACATGGTGGTTATGGCTCCTTCCGATG AGGCAGAGCTTTTCCACATGGTTGCTACTGCTACTGCTATAGATGATCGTCCTAGTTGTTTCCGCTATCCAAGAGGTAATGGTGTTGGTGTTCAGCTGCC ACCAGGAAACAAAGGCGTTCCTCTTGAGGTTGGAAAGGGCAGGATGCTGATTGAAGGGGAGAGAGTGGCACTCTTAGGTTATGGTACGGCAGTCCAGAGC TGTTTAGCTGCTGCCTCTTTAGTAGAACGCCATGGTATTCGTCTGACAGTTGCAGATGCCAGGTTCTGCAAGCCGTTGGATCATGCCCTTATTCGCAGCC TAGCGAAATCACATGAGATTTTGATTACAGTGGAAGAAGGATCAATTGGGGGCTTTGGGTCTCATGTTGTTCAATTTCTGGCCCTTGACGGTCTTCTTGA TGGCAAACTAAAGTGGCGACCAGTTGTTCTTCCTGATAGGTACATTGACCATGGATCACCAGCAGATCAGTTGGTAGAAGCTGGTCTCACACCATCTCAC ATTGCCGCAACAGTATTCAGTATTCTTGGACAAAGAAGAGAGGCTCTGGAGATTATGTCATCATAA
AA sequence Show only first row Show all	>Potri.010G015200.1 pacid=42797367 polypeptide=Potri.010G015200.1.p locus=Potri.010G015200 ID=Potri.010G015200.1.v4.1 annot-version=v4.1 MALSAFSFPAHVNSVTSLEHPQKFSLLSSHFLWRTDLLSQSLDKINQIHVKKRANGICASLSERGEYHSQRPPTPLLDTINYPIHMKNLSVKELKQLADE LRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRRDKMHTIRQTNGLAGFTKRSESEYDCFGTGHSSTTISAGLGMA VGRDLKGGTNKVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTANLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLIAILKEVKSTKTTGPVLIHVVTEKGRGYPFAERAADKYHGVAKFDPATGKQFKASPSTQS YTTYFAEALTAEAEADKDIVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDR AGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVATATAIDDRPSCFRYPRGNGVGVQLPPGNKGVPLEVGKGRMLIEGERVALLGYGTAVQS CLAAASLVERHGIRLTVADARFCKPLDHALIRSLAKSHEILITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPVVLPDRYIDHGSPADQLVEAGLTPSH IAATVFSILGQRREALEIMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.010G015200 [exp]	0	1
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	1.73	0.8840	Pt-KUP3.1
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	17.32	0.8394
AT5G14370			CCT motif family protein (.1)		Potri.001G339200 [exp]	17.54	0.8330
AT1G57790			F-box family protein (.1)		Potri.016G079300 [exp]	17.94	0.8526
AT1G65070			DNA mismatch repair protein Mu...		Potri.004G041900 [exp]	21.49	0.8194
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	22.24	0.8339
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Potri.017G050900 [exp]	24.08	0.8331
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	28.14	0.8449
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	34.98	0.8340
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	43.24	0.8216

Compare expression of checked genes

Potri.010G015200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.