Plant FIBer expression Database

Potri.010G015666 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G015666.1 pacid=42798271 polypeptide=Potri.010G015666.1.p locus=Potri.010G015666 ID=Potri.010G015666.1.v4.1 annot-version=v4.1
ATGGAGATGGTCCTAGTATCAATCAACACCGTGATGCAGGTTTGGCCTACTGGAGATGATGTGCGGATGGTTCACTACTCTTATATCGCTGATACAAAGA
TCTGGTTGGGTGAGGCTCTCTCCCCAATCGCTTTGTGCAGGGCTTTATTCTTGCTCTTTCCTGCCCTTCCCTGTTGGTCTGCCTTGGAATGTTGGCTTGC
TAGTATTCTTTGGCTACTGCAACCTTGGGTTTATTGGAGGGCCACTTGCGGCTGGCTGTGTGCTGCTTCTTGTAGCTTGGTTTGCTGGACTCTGTCCTTG
GTTTGCTATGGTTTGCAAGGGTGCTGA
AA sequence
>Potri.010G015666.1 pacid=42798271 polypeptide=Potri.010G015666.1.p locus=Potri.010G015666 ID=Potri.010G015666.1.v4.1 annot-version=v4.1
MEMVLVSINTVMQVWPTGDDVRMVHYSYIADTKIWLGEALSPIALCRALFLLFPALPCWSALECWLASILWLLQPWVYWRATCGWLCAASCSLVCWTLSL
VCYGLQGC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G015666
[exp]
0 1
AT3G18680 Amino acid kinase family prote... Potri.007G110301
[exp]
4.58 0.8496
AT4G10500 2-oxoglutarate (2OG) and Fe(II... Potri.011G150200
[exp]
5.65 0.7795
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050120
[exp]
6.63 0.8427
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Potri.001G260700
[exp]
6.92 0.8070
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050300
[exp]
8.48 0.8324
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050180
[exp]
14.07 0.8068
AT3G59030 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALI... Potri.002G055100
[exp]
20.97 0.7717
AT5G39450 F-box family protein (.1) Potri.007G102000
[exp]
21.16 0.7836
AT1G63440 HMA5 heavy metal atpase 5 (.1) Potri.001G019100
[exp]
22.73 0.7443
AT5G53540 P-loop containing nucleoside t... Potri.012G015670
[exp]
23.32 0.7768

Potri.010G015666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.