Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 848 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 731 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 698 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 690 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 681 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 655 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 647 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 633 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 620 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 617 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G015800 [exp] 1524 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 1513 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 1493 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 1489 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 1487 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017600 [exp] 1465 / 0 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 1449 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017100 [exp] 1387 / 0 AT4G27290 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G025800 [exp] 1328 / 0 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 879 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 879 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 853 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 839 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 832 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038557 [exp] 824 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 815 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 784 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 783 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 779 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.010G017450.3 pacid=42797808 polypeptide=Potri.010G017450.3.p locus=Potri.010G017450 ID=Potri.010G017450.3.v4.1 annot-version=v4.1 ATGGATTCCATCCCCATGCTTGTTTTCTGCTTCATTTCATTTCTGATTGTAAGAACAGCCACACCTACTGACACCATAAACACAGCGCAGTTCATTAGAG ATGGAGACACTATAGTTTCAGCTGGTGGGACATATGAATTAGGATTTTTCAGCCCCGGGAAATCCAAAAACCGATACTTGGGGATATGGTATGGCAAAAT ATCTGTCCAGACAGCTGTTTGGGTTGCCAACAGAGAAACTCCACTTGACGATTCATCAGGTGTTGTAAGGCTTACAAACCAAGGAGTTCTTGTTCTTCTC AATCGTAGTGGAAGCATCATTTGGTCTTCCAACACATCAACACCTGCTAGGAATCCAGTTGCGCAGCTTTTGGATTCAGGAAACCTTGTTGTGAAAGAGG AGGGTGATAATAACATGGAGAATTCCTTGTGGCAGAGTTCTGATTATCCAGGCAACACACTATTACCGGGCATGAAGGTAGGACGGAATATAATAACTGG CATGGACTGGCACTTGACATCATGGAAGTCACCAGATGATCCTTCCAGAGGTAATATTTCAATAATCCTTATTCCTGATGGATATCCGGAGTATGCAGTG TTGGAAGATTCAACTGTGAAGTATCGAAGTGGGCCATGGAATGGTCTGGGGCTCAGTGGCTTGCCTCGGTTAAAACCAAATCCAGTGTACACATTTGAAT TTGTTTTTAATGATAAGGAGATATTTTTCAGAGAAAATCTTCTTAATAACTCAAGGAATTGGAGGGTCTTCGTAAGTCAGAGTGGTGATATCCAGCACCT CCTCTGGATCGAGCAAACTCAAAGTTGGTTTCTTTATGAAACAGGAAATACAGATAATTGTGAGCGTTATGCACTCTGTGGCGCAAATGGTATCTGTAGC ATTAACAACTCTCCAGTGTGTAATTGCTTGAACGGATTTGTACCAAAAGTTCCAAGAGACTGGGACAAGACAGATTGGTCAAGCGGTTGCGTTAGAAAGA CAGCACTAAATTGTTCCAGAGATGGGTTTCGGAAGCTCAGAGGTTTGAAGATGCCGGAGACAAGAAAATCATGGTTCAACAGGAGTATGAACCTGGAGGA GTGCAAGAACACATGCTTGAAGAACTGCAGCTGTACTGCGTATACAAACTTGGACATCAGGGATGGAGGAAGTGGTTGCTTGCTTTGGTTCAATGATTTG ATAGATATGAGAACTTTCCTTCAAAACGAGCAAGACATTTTTATACGGATGGCTGCATCAGAACTAGATAACGGTGGCTCTGCAAAGGCTAATACCAAAT CCAAAGTGAAGAAAATGATCATAGTAAGCTCTGTGTTGTCTACTGGGATTCTGTTCGTTGGCTTATGCTTGGTCTTGTATGTTTGGAAAAAGAAGCAGCA GAAAAACAGAAAAATGACAGGTAATTTGCAGAGAAGATCAAATAACAAGGACTTGAAGGAAGAACTAGAAATACCCTTCTTTAACGTGGATGCGTTGGCT TGTGCAACAAATAACTTTTCTGTATCCAATAAACTAGGACAAGGGGGTTACGGACCTGTTTATAAGGGAACATTAACAGATGGACGAGAAATAGCTGTCA AGAGGCTCTCTAAGAATTCACGACAAGGACTTGATGAGTTCAAAAATGAAGTCAAACATATCGTGAAACTTCAGCACCGAAATCTAGTGAGGCTTCTTGG ATGCTGCATTGAAAGAGATGAAAATATGTTGGTCTACGAGCTTTTGCCTAACAAAAGCTTGGACTTCTACATTTTTGATGAAACTCGAAGCTTGCTACTA GATTGGCCTAAGCGCTACAACATCATCAACGGGATTGCTCGGGGACTCCTTTATCTTCACCAAGATTCGAGACTAAGAATAATCCACAGAGATCTGAAAA CGAGCAATATTTTGTTGGATTACGAAATGAATCCAAAAATCTCAGACTTTGGCCTGGCTAGAAGTTTTGGAGAAAATGAAACTGAAGCCAACACTAATAA AGTGGCTGGAACGTATGGTTACATATCTCCAGAGTACGCAAATTATGGGCTCTACTCGCTAAAATCAGACGTCTTCAGCTTTGGAGTATTGGTGCTAGAG ATAGTGGGTGGCTATAGGAACAGAGGATTCCGTCATCCAGATCACCACCTCAACCTTATTGGGCATGCTTGGAGACTGTTCAAACAAGGCAGGCCTCTGG AACTGGCTGCGGGATCAAAAGGTGAAACACCTTATTTGTCTGAAGTGCTACGTTCAATTCACGTGGGGCTATTGTGTGTGCAAGAAAATCCAGAAGATAG ACCAAACATGTCATATGTGGTTTTGATGTTGGGTAATGAAGATGAATTGCCGCAGCCTAAACAACCAGGATTCTTCACTGAAAGGGATCTTGTTGAAGCA AGCCATTCATCAAGCGAGAGCAAACCACATTCGGCAAACATATGCTCAGTTTCAGTGTTAGAGGCAAGATAG
AA sequence Show only first row Show all	>Potri.010G017450.3 pacid=42797808 polypeptide=Potri.010G017450.3.p locus=Potri.010G017450 ID=Potri.010G017450.3.v4.1 annot-version=v4.1 MDSIPMLVFCFISFLIVRTATPTDTINTAQFIRDGDTIVSAGGTYELGFFSPGKSKNRYLGIWYGKISVQTAVWVANRETPLDDSSGVVRLTNQGVLVLL NRSGSIIWSSNTSTPARNPVAQLLDSGNLVVKEEGDNNMENSLWQSSDYPGNTLLPGMKVGRNIITGMDWHLTSWKSPDDPSRGNISIILIPDGYPEYAV LEDSTVKYRSGPWNGLGLSGLPRLKPNPVYTFEFVFNDKEIFFRENLLNNSRNWRVFVSQSGDIQHLLWIEQTQSWFLYETGNTDNCERYALCGANGICS INNSPVCNCLNGFVPKVPRDWDKTDWSSGCVRKTALNCSRDGFRKLRGLKMPETRKSWFNRSMNLEECKNTCLKNCSCTAYTNLDIRDGGSGCLLWFNDL IDMRTFLQNEQDIFIRMAASELDNGGSAKANTKSKVKKMIIVSSVLSTGILFVGLCLVLYVWKKKQQKNRKMTGNLQRRSNNKDLKEELEIPFFNVDALA CATNNFSVSNKLGQGGYGPVYKGTLTDGREIAVKRLSKNSRQGLDEFKNEVKHIVKLQHRNLVRLLGCCIERDENMLVYELLPNKSLDFYIFDETRSLLL DWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLE IVGGYRNRGFRHPDHHLNLIGHAWRLFKQGRPLELAAGSKGETPYLSEVLRSIHVGLLCVQENPEDRPNMSYVVLMLGNEDELPQPKQPGFFTERDLVEA SHSSSESKPHSANICSVSVLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017450 [exp]	0	1
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G103000 [exp]	1.73	0.7721
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123200 [exp]	10.95	0.7359
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.001G293300 [exp]	12.80	0.7293
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	15.29	0.6625
AT2G38430			unknown protein		Potri.019G030300 [exp]	25.49	0.6348
AT2G40390			unknown protein		Potri.010G183100 [exp]	28.74	0.6987
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	31.93	0.6653
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	36.49	0.6740
AT3G46920			Protein kinase superfamily pro...		Potri.018G114300 [exp]	53.27	0.6500
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Potri.017G031800 [exp]	65.90	0.6430

Compare expression of checked genes

Potri.010G017450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.