Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27300 311 / 7e-101 S-locus lectin protein kinase family protein (.1) AT4G27290 286 / 1e-91 S-locus lectin protein kinase family protein (.1) AT1G65790 286 / 2e-91 ARK1 receptor kinase 1 (.1) AT4G23180 278 / 1e-89 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G65800 281 / 4e-89 ARK2 receptor kinase 2 (.1) AT4G21380 280 / 5e-89 ARK3 receptor kinase 3 (.1) AT4G03230 283 / 6e-89 S-locus lectin protein kinase family protein (.1) AT4G23140 275 / 1e-88 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G21390 276 / 4e-87 B120 S-locus lectin protein kinase family protein (.1) AT4G11530 269 / 5e-86 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G018600 [exp] 511 / 2e-178 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015400 [exp] 501 / 8e-177 AT4G27290 683 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G025700 [exp] 483 / 5e-171 AT4G27290 576 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G025800 [exp] 483 / 1e-167 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 479 / 8e-166 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017100 [exp] 477 / 2e-165 AT4G27290 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 477 / 4e-165 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 474 / 4e-164 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 472 / 3e-163 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014811 [exp] 348 / 4e-115 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 345 / 2e-113 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 338 / 1e-110 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 335 / 9e-110 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 325 / 3e-106 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 325 / 9e-106 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10037731 [exp] 306 / 6e-101 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 304 / 6e-98 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 303 / 6e-98 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 303 / 2e-97 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.010G018050.1 pacid=42797243 polypeptide=Potri.010G018050.1.p locus=Potri.010G018050 ID=Potri.010G018050.1.v4.1 annot-version=v4.1 ATGCTGGTCTACGAGTTCTTGCCTAACAAAAGCTTGGACTTCTATATTTTTGATGAGACTCATAGCTTGCTACTAGATTGGACTAAACGCTACAACATCA TCAACGGGATTGCTCGAGGACTCCTTTATCTTCACCAAGATTCGAGACTAAGAATAATCCACAGAGATCTGAAAACCAGCAATATTTTGTTGGATTACGA AATGAATCCAAAAATCTCAGACTTTGGCCTGGCTAGAAGTTTTGGAGAAAATGAAACTGAAGCCAATACTAATAAAGTGGCTGGAACGTATGGTTACATA TCTCCAGAGTACGCAAATTATGGGCTCTACTCGCTAAAATCAGACGTCTTCAGCTTTGGAGTATTGGTGCTAGAGATAGTGAGTGGCTATAAGAACAGAG GATTCAGTCACCCAGATCACCACCTCAACCTTATCGGGCATGCTTGGATACTGTTCAAGCAAGGCAGGTCTCTGGAACTGGCTGCGGGATCAGGAGTTGA AACACCCTATTTGTCTGAAGTCCTACGTTCAATTCATGTGGGGCTGTTGTGTGTGCAAGAAAATACAGAAGATCGACCAAACATATCACATGTGGTTTTG ATGTTGGGTAATGAAGATGAATTGCCTCAGCCTAAACAACCAGGATTTTTCACTGAAAGGGATCTTGATGAAGCAAGCTATTCATCGAGCCAGAACAAAC CACCTTCGGCAAACGGATGCTCGATTTCAATGTTAGAGGCAAGATAG
AA sequence Show only first row Show all	>Potri.010G018050.1 pacid=42797243 polypeptide=Potri.010G018050.1.p locus=Potri.010G018050 ID=Potri.010G018050.1.v4.1 annot-version=v4.1 MLVYEFLPNKSLDFYIFDETHSLLLDWTKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYI SPEYANYGLYSLKSDVFSFGVLVLEIVSGYKNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVVL MLGNEDELPQPKQPGFFTERDLDEASYSSSQNKPPSANGCSISMLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27300			S-locus lectin protein kinase ...		Potri.010G018050 [exp]	0	1
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Potri.015G022600 [exp]	6.63	0.6921
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Potri.002G108800 [exp]	6.63	0.8896
					Potri.003G194950 [exp]	7.41	0.8896
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018600 [exp]	7.74	0.8116
					Potri.017G127501 [exp]	8.12	0.8896
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017800 [exp]	10.19	0.8057
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G043500 [exp]	10.58	0.8432
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G064900 [exp]	10.81	0.8339
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172866 [exp]	10.95	0.8322
AT4G34880			Amidase family protein (.1)		Potri.004G169400 [exp]	11.00	0.8260

Compare expression of checked genes

Potri.010G018050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.