Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 444 / 4e-148 S-locus lectin protein kinase family protein (.1) AT4G21380 330 / 1e-103 ARK3 receptor kinase 3 (.1) AT1G65790 301 / 6e-93 ARK1 receptor kinase 1 (.1) AT3G12000 288 / 5e-92 S-locus related protein SLR1, putative (S1) (.1) AT1G65800 298 / 1e-91 ARK2 receptor kinase 2 (.1) AT4G27300 284 / 1e-86 S-locus lectin protein kinase family protein (.1) AT1G11340 283 / 2e-85 S-locus lectin protein kinase family protein (.1) AT1G11410 274 / 2e-82 S-locus lectin protein kinase family protein (.1) AT1G61380 259 / 2e-77 SD1-29 S-domain-1 29 (.1) AT1G11330 258 / 1e-76 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G017600 [exp] 883 / 0 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 867 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 861 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 797 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 795 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 762 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 758 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017100 [exp] 726 / 0 AT4G27290 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 720 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014808 [exp] 447 / 1e-150 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 416 / 3e-136 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 415 / 4e-136 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 413 / 2e-135 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 404 / 5e-132 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 400 / 7e-131 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 398 / 1e-129 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 389 / 4e-126 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014810 [exp] 364 / 1e-117 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 357 / 2e-114 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.010G018200.1 pacid=42797174 polypeptide=Potri.010G018200.1.p locus=Potri.010G018200 ID=Potri.010G018200.1.v4.1 annot-version=v4.1 ATGAGAGTACCAATGGATTATATTTCCGTGCTTCGTTTTTGCTTCACTTTGCTGCTGATTGTAAGAGTAGCCACCCCTACTGACACCATGCGCACAACTC AGCCAATTAGAGATGGAGATAGCATAGTTTCAGCTGGTGGGACATATGAATTAGGATTTTCCAGCCCCGGTAAATCCAGAAACCGATACTTGGGGATCTG GTATTGTAAAATATCGGTCCTGACGCCAGTTTGGGTTGCCAACAGAGAAACTCCACTTAACGATTCATCAGGTGTTGTAATGCTTACCAACCAAGGACTT CTTGTCCTTCTCAATCGTAGTGGAAGCATCATTTGGTCTTCCAACACATCAGCACCTGCTAGGAATCCAGTTGCACAGCTTTTGGATTCAGGAAACCTTT TTGTGAAAGAGGATGGTGATAATAACATGGAGAACTCCTTGTGGCAGAGTTTTGACTATCCAGGTAACACACTAATACCGGGCTCGAAGCTAGGACGGAA TAGAATAACTGGCATGGACTGGCACTTGACATCATGGAAGTCATCAGATGATCCTTCCAGAGGTAATATTTCAATAATCCTTGTTCCTGAAGGATATCCT GAGTATGCAGCGGTGGAAGATTCAAAAGTGAAGTATCGAGGTGGGCCATGGAATGGTCTGGGGTTCAGTGGATTGCCTCGGTTAAAACCAAATCCAATAT ACACATTTGAATTTGTTTTTAATGATAAGGAGATATTTTACAGAGAAACTCTTGTCAATAACTCAACGCATTGGAGAGCCGTCGCAACTCAGAATGGTGA TCTCCAGCTCCTTTTGTGGATGGAGCAAATCCAAAGCTGGTTTCTTTACGCAACAGTAAATACAGATAATTGTGAGCGTTATAACCTCTGTGGTCCAAAT GGTATCTGTAGCATTAACCACTCTCCAGTTTGCGATTGCTTGATTGGATTTGTACCAAAAGTTCCAAGAGACTGGAAGAAGACAGACTGGTCAAGTGGTT GCGTTAGAAAGACTGCACTAAATTGTTCCAGAGATGGGTTTCGGAAGGTCAGAGGTTTGAAGATGCCGGAGACAAGAAAATCATGGTTCAACAGGAGTAT GAACCTGGAGGAGTGCAAGAACACATGCTTGAAGAACTGCAGCTGTACTGCGTATGCAAACTTGGACATCAGGGATGGAGGAAGCGGTTGCTTGCTTTGG TTCAATGATTTGATTGATATGAGAACTTTCGTTCAAAATGAGCAAGACATTTTTATACGGATGGCTGCATCAGAACTAGGATCCACTGCTTGGAGACTGT TCAAACAAGGCAGGCCTCTGGAACTGGCTGCGGGATCAAAAGTTGAAACACTTTATTTGTCTGAAGTGCTACGTTCAATTCACGTGGGGCTATTGTGTGT GCAAGAAAATCCAGAAGATAGACCAAACATGTCATATGTGGTTTTGATGTTGGGTAATGAAGATGAATTGCCTCAGCCTAAACAACCAGGATTCTTCACT GAAAGGGATCTCGTTGAAGTAAGCTATTCATCAAGCCAGAGCAAACCACCTTCGGCAAACGTATGCTCGATTTCAGTGTTAGAGGCAAGATAG
AA sequence Show only first row Show all	>Potri.010G018200.1 pacid=42797174 polypeptide=Potri.010G018200.1.p locus=Potri.010G018200 ID=Potri.010G018200.1.v4.1 annot-version=v4.1 MRVPMDYISVLRFCFTLLLIVRVATPTDTMRTTQPIRDGDSIVSAGGTYELGFSSPGKSRNRYLGIWYCKISVLTPVWVANRETPLNDSSGVVMLTNQGL LVLLNRSGSIIWSSNTSAPARNPVAQLLDSGNLFVKEDGDNNMENSLWQSFDYPGNTLIPGSKLGRNRITGMDWHLTSWKSSDDPSRGNISIILVPEGYP EYAAVEDSKVKYRGGPWNGLGFSGLPRLKPNPIYTFEFVFNDKEIFYRETLVNNSTHWRAVATQNGDLQLLLWMEQIQSWFLYATVNTDNCERYNLCGPN GICSINHSPVCDCLIGFVPKVPRDWKKTDWSSGCVRKTALNCSRDGFRKVRGLKMPETRKSWFNRSMNLEECKNTCLKNCSCTAYANLDIRDGGSGCLLW FNDLIDMRTFVQNEQDIFIRMAASELGSTAWRLFKQGRPLELAAGSKVETLYLSEVLRSIHVGLLCVQENPEDRPNMSYVVLMLGNEDELPQPKQPGFFT ERDLVEVSYSSSQSKPPSANVCSISVLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018200 [exp]	0	1
					Potri.011G151550 [exp]	2.82	0.8476
AT4G27290			S-locus lectin protein kinase ...		Potri.010G015800 [exp]	3.16	0.8327
AT4G38040			Exostosin family protein (.1)		Potri.001G072500 [exp]	9.79	0.7940
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	12.24	0.8158	FAD2.3
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G092800 [exp]	15.49	0.7478	Pt-CHI3.5
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G069001 [exp]	15.49	0.7893
AT1G19530			unknown protein		Potri.002G034500 [exp]	18.33	0.8135
AT3G57062			unknown protein		Potri.016G038300 [exp]	21.63	0.7374
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017800 [exp]	23.91	0.7965
					Potri.013G028450 [exp]	32.31	0.7800

Compare expression of checked genes

Potri.010G018200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.