Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18750 445 / 8e-142 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18730 311 / 2e-95 unknown protein AT3G06340 253 / 2e-72 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G18740 229 / 3e-66 Domain of unknown function (DUF3444) (.1) AT5G27240 218 / 3e-58 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04960 207 / 1e-57 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT3G04980 180 / 4e-46 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G27980 170 / 2e-44 Domain of unknown function (DUF3444) (.1) AT3G05110 161 / 4e-43 Domain of unknown function (DUF3444) (.1) AT5G53150 161 / 1e-40 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196201 [exp] 566 / 0 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.013G029500 [exp] 508 / 3e-163 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 493 / 3e-157 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196301 [exp] 262 / 3e-82 AT5G18730 158 / 1e-46 unknown protein Potri.015G097500 [exp] 166 / 3e-42 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 166 / 3e-42 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 161 / 1e-40 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 160 / 2e-40 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 157 / 3e-39 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033983 [exp] 749 / 0 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012795 [exp] 374 / 3e-115 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 236 / 3e-65 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 228 / 9e-62 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 225 / 1e-60 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 211 / 2e-56 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 211 / 3e-56 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042540 [exp] 204 / 2e-54 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 174 / 4e-45 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 171 / 3e-44 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.010G018800.1 pacid=42799049 polypeptide=Potri.010G018800.1.p locus=Potri.010G018800 ID=Potri.010G018800.1.v4.1 annot-version=v4.1 ATGGAGTGCAACAAAGATGAGGCCTTCAGGGCGAAGGGCGTTGCAGAGAGTTTGATGGTAAAGAAGGATTTTCCAACAGCCCGTAGAATTCTGCTCAAAG CCCAACAACTTTATAAGGATTTGGAAAACATTTCTCAGATGCTAACTGTTTGTGATGTGCATTGCACTGCCGATAAAAAACTGTTAGGGACTGACATGGA CTGGTATGGCATCCTTCAGATTGAAGAGACAGCTGACGAAGCAACTATTAAGAAACAGTACAGGAAATTTGCCCTCCAACTTCATCCTGACAAAAATCAG TTCCCTGGTGCTGAATCTGCATTTAAGTTAATTAAGGATGCCCAAACAGTGCTTTTGGACAAGGGAAAACGGTCCTTGCATGATATTAAACGCAAAGCTT CTATGAGTAAACCTGCACCACCATACCGGCCACCACAGAAGGCAACCCACTGCTCAAACTTTACTGGCTTCAATCCTCACTACAGGCAATCACAACAGCC AGCCTCTCAACGTGATTCCTCTAATGGCCGGCCAACTTTCTGGACTGCCTGTCCATTTTGTACTGTAAGATACCAGTATTACATAGAAATTATTAACAAA CCTCTTGTGTGCCAGAGTTGCAACAGATCCTTTTTTGCATATGAAAGGAGTGGACAGGGGCTTCCGACAGAACGTAACTTGAATCAATCATCATTTCCGC AAAGGAAGAATATCCCAAATCAGACTGCTAGCAATGTGGGGCTGGGACGCCAAGAAAATCTGAACACTGTGCCATCTAAAACAGAGTTCCGTTCAGAAAA GTTAAATGGTAAAAGAAAGAAGAAGCAAGAAGAGGAGTCCAGTGAAAGTTGCAACACTGAAACTGATTCTGATGAAGACTTGGCTAGTGAGGAAGATGGT GATTTTAAGGCTGAGGTGAATTTTGAATATAAAGGAGAGCGCCCAAGGCGATCTGGACGGCAAAAACAGCAGGTTTCTTATAAGGAAAATCTGAGTGATG ATGAAGACTATGTGAGAGATCCAAAAATGGCCAAGTTGAGTGGATCGTTCTGTGAAACTGAAGAGGAGAATGCGAATGAAATGAGGGAGGATGTGTCTTA CAAAGAAGATCAATCTAGTATAGCTGCTGATGTGAAAGACGAAACCATCCTGAAACCAGAAGAAAGTAAAGAAATCAAGGACACCGAGAATGTGAAGGGA AAAGAAAAGGTAGAAGCAATTTTCTGTCAGAAAAACTCTGAGACTCCTATTCGCTTGTCATCAGATTCAACCTCACAATCCGCATCAGATCCGGATTCAT ATGACTATCCCGATCCTGATTTCCATGATTTTGACAAAGATCGGGGTGGAGAGTGCTTTTCAGTGGGGCAGGTGTGGGCTGTATATGACACCTTGGATGC CATGCCTAGATTTTATGCTCAAATCAAGAAAGTTGTCTCTCCTGGGTTCAATTTGCGGATAACCTGGCTAGAGGCATGCCCAGATGATCAGAATGAAGCT GAATGGGTTGAGGAGGGCTTGCCTGTGGCTTGTGGTAAGTTCAAAAATGGAAAATCTCAATACACTGACAAGCGGCTAATGTTTTCTCATCTGATTGATT TGGAAGAAAGTGGCCAAAGAAACACATACAAGATATTTCCTAGAAAGGGGGAGACTTGGGCCCTCTTCAAAAATTGGGATCTCAAATGGATATCTAATGC AGATGCTCATCAGGACTATGAATATGAGTTTGTTGAAATTTTGTCCGAATATGCTGAGGGTGTTGGTGCGCGTGTTGCCTTCTTGGGTAAAGTGAAGGGC TTTGTGAGCCTTTTTTGTCGGATTAGAAAGGAAGGAATGGACGTGTTTGAAATTCCTCCAGCTGAACTGTTCCGGTTCTCCCACATGATTCCATCATTCA AACTGACAGGCAATGAAAGAGAAGGTGTGCCAAGGGGATCTTTTGAACTTGATCCAGCTTCTTTGCCTAAAACAATTTTAGAGACTGCCAATCCTGAAGA TCTCAGAGAGGAGGTTGGCAATGCTCATTGTGATGGATCATGTTCGAGATCCTCAGACAAAGCAAAACCTGAAGAGGTATGTGAATCAGGTACTTCGATG CATCAGCCTGACACAAAAGGGACGTCTCTGCTATCTAAGGATAATTGTGGCAGCATCATGGAAGATTGCAGTGCCAGTGCCGTAGATGCTATTGAAATTC CAGAATCAGAATTTTTCAACTTTGACGCAGAGAAATCCATTGAAAAGTTCCAGGTTGGTCAGATCTGGTCACTGTACAGTGATGAGGATGGCTTGCCAAA GTACTATGGTCAAATTATGAAAATTCAATCTGACCAAGGTTTTAAGTTGTGGTTAAGGTGGCTTACTCCTTGTTCGCTGCCGAAAACTGTGATTCAGTGG CAAGATAAGAAAATGCCTACTTGTTGTGGAAGATTTAAGGCAAAAAATGGAAAACTAAACTACTATTCTTCTACCACTTCCTTCTCGCATCGATTAGCTG TAGAATTTGATGGTAAGAGAAATGAATATACCATTTTGCCAAGGAAAGGTGAAGTTTGGGCTCTGTACAAGAATTGGTTCCCTGAAATTAAACATTCTGA CTTGGAGAATTGTGAATATGATGTGGTGGAAGTCCTTGATCAAAATGATTTGCAGATTAAGGTTTCACTTTTAGAACGTGTAAGTGGTTTCAACTCAGTT TTCAAGACAAAATTAATAGGGCTGTCGGCTCATACACAGGAGGTTCTCTGTACTGAGCTGATTAGATTCTCCCATCAAATTCCTGCTTGTCAACTGACAG AAGAGAGGGGTGGCAGTCTCAGAGGCTTCTGGGAACTTGATCCTGCAGCTTTGCCAGTTCATTATTTTGACCTGATTTGA
AA sequence Show only first row Show all	>Potri.010G018800.1 pacid=42799049 polypeptide=Potri.010G018800.1.p locus=Potri.010G018800 ID=Potri.010G018800.1.v4.1 annot-version=v4.1 MECNKDEAFRAKGVAESLMVKKDFPTARRILLKAQQLYKDLENISQMLTVCDVHCTADKKLLGTDMDWYGILQIEETADEATIKKQYRKFALQLHPDKNQ FPGAESAFKLIKDAQTVLLDKGKRSLHDIKRKASMSKPAPPYRPPQKATHCSNFTGFNPHYRQSQQPASQRDSSNGRPTFWTACPFCTVRYQYYIEIINK PLVCQSCNRSFFAYERSGQGLPTERNLNQSSFPQRKNIPNQTASNVGLGRQENLNTVPSKTEFRSEKLNGKRKKKQEEESSESCNTETDSDEDLASEEDG DFKAEVNFEYKGERPRRSGRQKQQVSYKENLSDDEDYVRDPKMAKLSGSFCETEEENANEMREDVSYKEDQSSIAADVKDETILKPEESKEIKDTENVKG KEKVEAIFCQKNSETPIRLSSDSTSQSASDPDSYDYPDPDFHDFDKDRGGECFSVGQVWAVYDTLDAMPRFYAQIKKVVSPGFNLRITWLEACPDDQNEA EWVEEGLPVACGKFKNGKSQYTDKRLMFSHLIDLEESGQRNTYKIFPRKGETWALFKNWDLKWISNADAHQDYEYEFVEILSEYAEGVGARVAFLGKVKG FVSLFCRIRKEGMDVFEIPPAELFRFSHMIPSFKLTGNEREGVPRGSFELDPASLPKTILETANPEDLREEVGNAHCDGSCSRSSDKAKPEEVCESGTSM HQPDTKGTSLLSKDNCGSIMEDCSASAVDAIEIPESEFFNFDAEKSIEKFQVGQIWSLYSDEDGLPKYYGQIMKIQSDQGFKLWLRWLTPCSLPKTVIQW QDKKMPTCCGRFKAKNGKLNYYSSTTSFSHRLAVEFDGKRNEYTILPRKGEVWALYKNWFPEIKHSDLENCEYDVVEVLDQNDLQIKVSLLERVSGFNSV FKTKLIGLSAHTQEVLCTELIRFSHQIPACQLTEERGGSLRGFWELDPAALPVHYFDLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18750			DNAJ heat shock N-terminal dom...		Potri.010G018800 [exp]	0	1
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	4.69	0.8680
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	7.48	0.8485
AT1G52620			Pentatricopeptide repeat (PPR)...		Potri.001G139200 [exp]	8.83	0.8516
AT2G24530			unknown protein		Potri.018G005700 [exp]	8.94	0.8458
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046100 [exp]	11.40	0.8205
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.007G093400 [exp]	12.40	0.8266
AT2G41620			Nucleoporin interacting compon...		Potri.012G034800 [exp]	14.38	0.7915
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	16.91	0.8414
AT5G53220			unknown protein		Potri.015G022500 [exp]	17.54	0.8038
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	17.88	0.8467

Compare expression of checked genes

Potri.010G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.