Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 736 / 0 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029800 [exp] 689 / 0 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029900 [exp] 490 / 2e-169 AT3G06350 516 / 4e-179 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.005G043400 [exp] 486 / 5e-168 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.014G135500 [exp] 446 / 4e-152 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 352 / 2e-119 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.017G103401 [exp] 61 / 3e-12 AT3G06350 59 / 2e-12 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033981 [exp] 808 / 0 AT3G06350 752 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10012797 [exp] 807 / 0 AT3G06350 748 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10001725 [exp] 402 / 4e-134 AT3G06350 315 / 9e-100 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10004130 [exp] 370 / 7e-122 AT3G06350 398 / 3e-132 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10040908 [exp] 290 / 2e-92 AT3G06350 291 / 2e-92 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10005928 [exp] 182 / 1e-52 AT3G06350 180 / 9e-52 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01487 [poplar] [flax] DHquinase_I Type I 3-dehydroquinase CL0063 [poplar] [flax] NADP_Rossmann PF01488 [poplar] [flax] Shikimate_DH Shikimate / quinate 5-dehydrogenase CL0603 [poplar] [flax] AA_dh_N PF08501 [poplar] [flax] Shikimate_dh_N Shikimate dehydrogenase substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G019000.4 pacid=42799774 polypeptide=Potri.010G019000.4.p locus=Potri.010G019000 ID=Potri.010G019000.4.v4.1 annot-version=v4.1 ATGGATTCTGCAAGCAACGTCCTGTTAGCTTCATCACCTTCTGCTGCTGCCGCGGTGGGAATGGGGAGCGGGGGAGTAAGGAGGAATCCAACATTAATAT GTACGCCGATCATGGCTGATTCTGTTGATAAGATGGCGATTCTTATGGCTGAAGCTAAATCTGTGGGTGCTGATTTGGTTGAAATTCGTTTGGATAGTTT AAAGGATTTCAATCCTAATTCCGATATCAAAACCCTAATTCTTCACTCTCCTTTACCCACTCTTTTCACTTACAGGCCAATGTGGGAAGGTGGTCAGTAT AATGGCGATGAAAAACCGCGATTGGATGCGCTTCGATTAGCCATGGAGCTCGGAGCTGATTATATTGATGTTGAGCTCAAGGTTGCTCATGAATTCAATG AGTTGCTAAGAGGAAACAAGCCTGGGAAGTGCAAGCTCATTGTTTCTTCTCACAACTATGAGAATACTCCCTCGGTTGAGGAACTTGGTAATCTTGTGGC AAGAATACAGGCTGCCGGTGCTGATATTGTTAAGATTGCCACGACTGCTTTGGATATTTCTGATGTTGCGCGCATTTTTCAAATAACTGTTCATTCTCAA GTAAGAAGCGTTCCAATAATTGGACTTGTCATGGGTGAGAGGGGATTGATTTCACGGATACTTTGCGCTAAATTCGGTGGTTATCTCACCTTCGGCACCC TTGAGTCAGGGGTTGTTTCAGCCCCTGGTCAACCAACGATCAAGGATTTGTTAGATCTATACAACTTCAGACTAATTGGACCTGATACTAAAGTATTCGG AATTATTGGGAAGCCTGTTGGCCACAGCAAATCACCTGTTCTATTCAATGAAGCATTCAAGTCAGTTGGTATCAATGGGGTCTATGTGCATTTATTAGTG GATGACATTGCACGTTTTCTCCAGACTTACTCATCCACAGATTTTGCAGGATTCAGTTGCACAATTCCTCACAAAGAAGATGCTGCGAAGTGCTGTGATG AGGTTCATCCAGTTGCAAAGTCAATAGGAGCTGTTAATTGCATTATAAGAAGACAAAATGATGGGAAGCTATTTGGCTACAATACAGATTATGTTGGTGC TATTTCTGCTATTGAGGAAGGACTGCGAGCCTCACAAAATGTTAGCAATACAGTTGGTTCACCCTTAGCTGGGAAGTTGTTTGTGGTCATTGGTGCTGGT GGTGCCGGCAAGGCACTTGCTTATGGTGCAAAAGAAAAGGGGGCAAGAGTTGTCATTGCCAATCGCACCTATGAGCGCGCAAAAGTACTTGCTGACATAA TTGGAGGAGATGCTATAACTCTTGCTGATCTGGAGAATTTCCATCCAGAGGATGGCATGATTCTTGCAAACACAACATCTATTGGAATGCAACCAAAAGT CGATGAAACACCTGTTTCCAAGAACGCTTTGAGATCTTACTCCCTGGTTTTTGATGCTGTTTACACCCCTAAAATAACCAGACTCTTGAGAGAAGCAGAA GAATCTGGAGCCAAGATTGTCACAGGGTTAGAGATGTTCATTGGGCAAGCATACGAACAGTTTGAGAGGTTTACTGAATTACCTGCACCCAAAGAACTCT TTCAGAAGATCATGTCAAAGTACTAG
AA sequence Show only first row Show all	>Potri.010G019000.4 pacid=42799774 polypeptide=Potri.010G019000.4.p locus=Potri.010G019000 ID=Potri.010G019000.4.v4.1 annot-version=v4.1 MDSASNVLLASSPSAAAAVGMGSGGVRRNPTLICTPIMADSVDKMAILMAEAKSVGADLVEIRLDSLKDFNPNSDIKTLILHSPLPTLFTYRPMWEGGQY NGDEKPRLDALRLAMELGADYIDVELKVAHEFNELLRGNKPGKCKLIVSSHNYENTPSVEELGNLVARIQAAGADIVKIATTALDISDVARIFQITVHSQ VRSVPIIGLVMGERGLISRILCAKFGGYLTFGTLESGVVSAPGQPTIKDLLDLYNFRLIGPDTKVFGIIGKPVGHSKSPVLFNEAFKSVGINGVYVHLLV DDIARFLQTYSSTDFAGFSCTIPHKEDAAKCCDEVHPVAKSIGAVNCIIRRQNDGKLFGYNTDYVGAISAIEEGLRASQNVSNTVGSPLAGKLFVVIGAG GAGKALAYGAKEKGARVVIANRTYERAKVLADIIGGDAITLADLENFHPEDGMILANTTSIGMQPKVDETPVSKNALRSYSLVFDAVYTPKITRLLREAE ESGAKIVTGLEMFIGQAYEQFERFTELPAPKELFQKIMSKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G019000 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.007G107200 [exp]	5.47	0.9155
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	5.91	0.8917	Pt-ARF1.7
					Potri.019G129700 [exp]	8.77	0.8875
AT2G41820			Leucine-rich repeat protein ki...		Potri.006G051700 [exp]	10.58	0.8780
					Potri.006G056101 [exp]	11.22	0.8955
					Potri.019G129820 [exp]	11.31	0.8501
AT2G23090			Uncharacterised protein family...		Potri.014G018100 [exp]	11.53	0.8592
AT1G01540			Protein kinase superfamily pro...		Potri.014G088800 [exp]	12.48	0.8271
AT5G03120			unknown protein		Potri.016G087000 [exp]	14.00	0.8427
					Potri.019G129150 [exp]	14.49	0.8513

Compare expression of checked genes

Potri.010G019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.