Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18640 512 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 493 / 3e-176 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G30550 77 / 3e-15 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 72 / 9e-14 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G14360 71 / 4e-13 alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 69 / 6e-13 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 68 / 2e-12 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT4G13550 67 / 6e-12 triglyceride lipases;triglyceride lipases (.1) AT1G51440 67 / 8e-12 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 65 / 2e-11 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054600 [exp] 75 / 1e-14 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 72 / 1e-13 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 72 / 1e-13 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G150700 [exp] 71 / 3e-13 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 71 / 4e-13 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G057900 [exp] 69 / 1e-12 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 68 / 2e-12 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G231600 [exp] 68 / 2e-12 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 67 / 4e-12 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033968 [exp] 488 / 8e-174 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10012812 [exp] 163 / 9e-49 AT5G18640 154 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1) Lus10000600 [exp] 75 / 5e-15 AT4G16820 304 / 4e-101 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 71 / 3e-13 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 70 / 5e-13 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 69 / 6e-13 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 70 / 7e-13 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 69 / 1e-12 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 69 / 2e-12 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 66 / 1e-11 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.010G019500.1 pacid=42797096 polypeptide=Potri.010G019500.1.p locus=Potri.010G019500 ID=Potri.010G019500.1.v4.1 annot-version=v4.1 ATGGTGATAGCGGGTCCACCAGAGTATATGGGGAAAAGGAGGTGGTTTATTTTGGCGATTTTTGTATGTCTGCTTGCTTTCTCTTGTGGAAGAGAACTTA TGGCCGAGCATAAGCACGCAGATAATCATCTAACCGCTTACAATCACTCTCTTGCAACAATATTGGTTGAGTATGCCTCTGCGGTATATATGTCAGATTT GACACAACTTTTTACTTGGACATGCCCGAGGTGTTCTGGTTTGACTGCGGGATTTGACATTATAGAGCTGCTTGTTGATGTTGAGCACTGCTTACAGTCA TTTGTTGGAGTTGCAAAGGATCTTAATGCTATAGTCATCGCCTTCAGAGGAACTCAGGAACACAGCATACAGAATTGGATTGAAGACTTGTACTGGAAAC AACTTGATATAAATTACCCGGGCATGCCTGATGCAATGGTGCACCATGGGTTTTATTCTGCATATCACAATACAACAATTCGACCTGGAATTCTAAATGC AGTCGAAAGAGCAAAGAAGTATTATGGAGATCTTAATATCATCGTGACAGGGCATTCAATGGGAGGAGCCATGGCAGCATTTTGCGGACTTGATTTGGTG GTTAATACTGAAGCCAAGAATGTTCAGGTTATGACATTTGGACAGCCTCGGGTTGGCAATGCAGCTTTTGCATCTTACTACAGTCAACTTGTGCCAAACA CAATCCGAGTCACAAATGACCATGATATTGTACCACATCTACCTCCATACTATCGTTATTTCCCTCAAAAGACATACCATCACTTCCCAAGAGAGGTTTG GCTTCATAACATTGGAGTGGGAAGTCTGGTTTATGAAGTGGAGAAGGTCTGTGATGGTTCTGGTGAAGACCCAGACTGTAGCAGGTCGGTGGCAGGGAAC AGTATTGCAGATCATTTAGTTTATTTTGGTGTTGAGCTGATGTGTGAGACATGGAGATCTTGTGGAATCGTGATGGATTCTCTTGCCAAAGAGTACGGAA AAATGGACGTCAAAGGAAATATTGTTTTTTCCAGAGATTCTTCTATTCTGAGAATGAAAACAGAGACAAACATTGGTGGAGATCGTATGTAG
AA sequence Show only first row Show all	>Potri.010G019500.1 pacid=42797096 polypeptide=Potri.010G019500.1.p locus=Potri.010G019500 ID=Potri.010G019500.1.v4.1 annot-version=v4.1 MVIAGPPEYMGKRRWFILAIFVCLLAFSCGRELMAEHKHADNHLTAYNHSLATILVEYASAVYMSDLTQLFTWTCPRCSGLTAGFDIIELLVDVEHCLQS FVGVAKDLNAIVIAFRGTQEHSIQNWIEDLYWKQLDINYPGMPDAMVHHGFYSAYHNTTIRPGILNAVERAKKYYGDLNIIVTGHSMGGAMAAFCGLDLV VNTEAKNVQVMTFGQPRVGNAAFASYYSQLVPNTIRVTNDHDIVPHLPPYYRYFPQKTYHHFPREVWLHNIGVGSLVYEVEKVCDGSGEDPDCSRSVAGN SIADHLVYFGVELMCETWRSCGIVMDSLAKEYGKMDVKGNIVFSRDSSILRMKTETNIGGDRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18640			alpha/beta-Hydrolases superfam...		Potri.010G019500 [exp]	0	1
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.009G080500 [exp]	4.47	0.8589
AT3G07310			Protein of unknown function (D...		Potri.002G247700 [exp]	10.39	0.8574
AT4G35750			SEC14 cytosolic factor family ...		Potri.005G246800 [exp]	11.35	0.7676
AT4G17790			SNARE associated Golgi protein...		Potri.003G094000 [exp]	15.55	0.7692
AT4G12710			ARM repeat superfamily protein...		Potri.014G170100 [exp]	20.00	0.8322
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	29.93	0.8159
AT3G15358			unknown protein		Potri.011G052900 [exp]	31.46	0.7533
					Potri.001G035450 [exp]	38.24	0.8349
AT2G13690			PRLI-interacting factor, putat...		Potri.007G109300 [exp]	52.63	0.8297
AT4G13270			Late embryogenesis abundant (L...		Potri.006G159400 [exp]	59.32	0.7484

Compare expression of checked genes

Potri.010G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.