Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39160 169 / 1e-43 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040429 [exp] 216 / 3e-59 AT4G39160 173 / 2e-46 Homeodomain-like superfamily protein (.1.2) Lus10023544 [exp] 0 / 1 AT4G39160 74 / 6e-14 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF15963 [poplar] [flax] Myb_DNA-bind_7 Myb DNA-binding like
Representative CDS sequence Show only first row Show all	>Potri.010G019600.1 pacid=42799000 polypeptide=Potri.010G019600.1.p locus=Potri.010G019600 ID=Potri.010G019600.1.v4.1 annot-version=v4.1 ATGGATCCTGATTTGGACCCTTTTGATGATATTCTTCCTAAGCCTGCCTTGACTAATGTAGCTAGGTTAGGTGGGAAGTTTCAGCCTAAGGCCAAACCAC GACCAAAAAAGGTGGAATTTGTACCAATTCCTTTTCCTCCAAGTAAAGCCAAGGAAAAGGCTGTGGCAGCATCGCAAACTAGCTTAGACACAAATATTTC TGTTCAGCCTTTTGGTATCATGGATGAGAAGTTGACATGTCAAATTGGTTCGTTGTCTCCATCATCACCTACTGGGACTAAGGAACCCTTGAAAAGCAAT GATGGAAAAACAAAATTGGTTGAAGAGTCAGGGAGTCCCTTAGCCACCTCTGACATGGTTGGGGTCAAAGAACCTCTGAAATATAAGGAAGGTTTGTCCT CTTGGGAAATAGGAAGCTTGGAGGCAGCAAACCTCTCCCCTGCTGGGATAAATGATGCAGGCTCTGTTGGTGCTATGGATTCGGAGGCTGCAATATCTGG TTGTAATGATGACCAGGAATCTAGCTTTGTGAAATCAGCAGGAGTGGCAGGCTCATTGGGGTTTGATTCAGATCTACTGGATGACATTCTTCCTAAATCT CTAAAAAATAATTCTAGGGCTGGCGGGAAATTCAAGCCTAAGGCTAAACCTCGGCAAAGAAATGAAAATCCAGCACCCGTCTCTTCATCTCCATCTAAAT GTGCCGAGGAAGAACCTAAGGCACATTCTCAACAAACACAATCCACAGAGCCTGTTGATGTTGCAAATACAAGGATGAACCCAGATGGTCCAACTTTACT TCAGCAGGGCAATGTTAAGAGTAATGAGCCATCAAAAGACAGCGAAGTTTTATATTTCAACGACAACAGCTGCATGGAATTAGTCAACCCCTCATCTGAA AATATTGCAACTGAAGAGGATGTGAGCCCCCAAAATACTCCGCTTGCAGAGATGAAGTCTGGAAATGATGTTGGCCTGAATTCTAGGTTTGTAGAATCTG CCATAGAGGTTGGTTCCATGAGATTAGATTTGGACGCTTTTGATTATATGGATCCTCAACCAGCCATATCAACTGGGAGGGCTGCTGGCAAGTTACAGTC GAAGGTAAAGGCCCGGCCTAGGAAGGGAACATCTGAGTTAGCTGCTTCTGCTGTTCCCAATACTGCGGTAGAAAAGGTGGCGGGTCTAGCTTCCACTGTC TTGGATAACATGCTGCCCGTTGAATCTTCTGGTGTTGAAAATGGTAGACTAACCGATCATGTTAGTGAGCCTAATATGGAGAGTGCTGGGACCAAAGAGC CAGGGAGAAACAATGGCCAGGCTCTTCTTTCTCCTCCAGAAATTTTAGCTACTGTCTTTTGTCAGAAGGACTCAAAGGGAAAATCCAGCTTTCCTGCACA AAATTTTGTTGATTCTTCAGCATTCATGAAATGTAATGTGGTGGCGACAGATTTTTCAAGTCCCAATGAAGCTGCTGTTCAGGTTGATAATGGAAGGTTG GAATTAGAGGAATCAGGGGCATTTCCTGGCTTGGAAACTCCAGGTTTCTTGTCCCCAGATGTCATGGAGTCTGTTATGGCCCCACCACCAAATGTTCAAC CTGTTCCTTCTGAAACCATAAACATTGATGGGTGTTCAGTTGCTGCCTTCCCATCAGATAATATTGTTGATTCCCCATGCACTCACCTAGGTGATTTTAT TCCTCCAGATCCTTGTACTTCTGAGATTCGAATGAACCAAGAACTGAAAAACCTTACAGAAACTTCTCGCTCAGATAATGTGACTGCTATCCATCAGGAG GATGCCTCTGATTTGCCAGAAAAGGAGACTTCTAGTAGTAGAAAAAGAAAGGCTGCTCCAGTATCATGTAGTTCTTGGAAGTCTCAAAAAGCTTCCTTAG CTGGTGACATGAACGAACATGACAAATCATCAAGGCATCTGACAAAGCAGGCCGCTGCCCCTCAACTTGGTGATGAGCCAGAATATGAGGCTCATGGCAA TGATGACTCATCCATGCACCCAGGCGATTTTCTTCCTTTTGATCCTTGTACCTCTGAGTTTCAAGTGGATCAAAATCAGAAAGACTTTACAGAAAGCAAT TGCTTGGCTAATGCAAATGTCGTGCGTTCAGAGGATGTTCCTGTAGTGCCTGAAAAGGAGAGTTCTAAGAGTGGAAAAAGAAAGGTTTTTTCAGCATCAA ATTGTTCCCGGAAGTCCAAAAAATCTTCCTTGGCAGCTGGCCCTCAAGTTGTTGATGAGCTGGATGAAGCTCATGATAATGGGGGGTTACCTGAACCTCC TGGTAGTTCTGTTGATGAAGAAGATAATGATTATGAACCTAGAGGGGATGAAGAGAGTGACGATGAAAACAAAGTGGAAATTGCATCTCGAAAGAAACGA GCTTCAAAAAAATCAAAGGAACCAGTGACTGAAAATGAAAAACCAGTTCGAAAGCGCAACAGATCCAATGACACTTCAGAACAGTCAATGCAAAAACCTC GCAAGAAGTTTTCTCATTCAACTCGTCGAAACAAAAGATGCGTGAATAAGGATTTGCTTAACATGCCAGAGGATGAGATTGATTTCAAGAGGTTGCCTAT CAGGGACATCATTTTGTTTGCAGAGTATAAGGAGCGGTTAGCAACGACAACATCAAAAATTCCCCCAAACAATCAAAGCACTGACAATCCATTTCATGGA GAATATTCCCATAATGAAGAGGATGGGTTTGCTTCGGAGCAAGACATAACCCATGGTGATGACCAAACATATGTTAGGGCTCAACCAAGTTCATCTTTAT TCAACTACCAGTCTTTCATGGACAGAGCACCCAATTCAAGATGGTCAAAACAAGACACAGAGTTGTTTTATGAGGGGATTCAACAATTTGGGACTGATTT ATCGATGATCCAACAACTTTTTCCTGGTCGAACACGGCATCAAGTCAAGTTAAAATATAAAAAGGAGGAGCGTCAGCACCCCTTAAGGCTCCATGAAGCT CTGAGCAGTCGTCCAAAAGATAATTCGTATTTTGAAAAGTTAATTGAGCAGCTACAAGAAGTTGCTGGTACTCAGGAAGAACAAGAGTCTTACAAAGATG ACCTAGTTGATGTGTCAGGCGAGGAGGATGCAGAGCTAAATGCTGAAACTAGTGGTGAAGTTACAAAACCCGAGCAGGGTGAGAATGCAGGAGTTGAAGA AGAACAGGAAAAGAATGTTGCTGAAGACCACCATGGTCCACTGAAATCTGGTGTTAGCGATGAGGACGTAGATGATATATGGGGTTCATATTAA
AA sequence Show only first row Show all	>Potri.010G019600.1 pacid=42799000 polypeptide=Potri.010G019600.1.p locus=Potri.010G019600 ID=Potri.010G019600.1.v4.1 annot-version=v4.1 MDPDLDPFDDILPKPALTNVARLGGKFQPKAKPRPKKVEFVPIPFPPSKAKEKAVAASQTSLDTNISVQPFGIMDEKLTCQIGSLSPSSPTGTKEPLKSN DGKTKLVEESGSPLATSDMVGVKEPLKYKEGLSSWEIGSLEAANLSPAGINDAGSVGAMDSEAAISGCNDDQESSFVKSAGVAGSLGFDSDLLDDILPKS LKNNSRAGGKFKPKAKPRQRNENPAPVSSSPSKCAEEEPKAHSQQTQSTEPVDVANTRMNPDGPTLLQQGNVKSNEPSKDSEVLYFNDNSCMELVNPSSE NIATEEDVSPQNTPLAEMKSGNDVGLNSRFVESAIEVGSMRLDLDAFDYMDPQPAISTGRAAGKLQSKVKARPRKGTSELAASAVPNTAVEKVAGLASTV LDNMLPVESSGVENGRLTDHVSEPNMESAGTKEPGRNNGQALLSPPEILATVFCQKDSKGKSSFPAQNFVDSSAFMKCNVVATDFSSPNEAAVQVDNGRL ELEESGAFPGLETPGFLSPDVMESVMAPPPNVQPVPSETINIDGCSVAAFPSDNIVDSPCTHLGDFIPPDPCTSEIRMNQELKNLTETSRSDNVTAIHQE DASDLPEKETSSSRKRKAAPVSCSSWKSQKASLAGDMNEHDKSSRHLTKQAAAPQLGDEPEYEAHGNDDSSMHPGDFLPFDPCTSEFQVDQNQKDFTESN CLANANVVRSEDVPVVPEKESSKSGKRKVFSASNCSRKSKKSSLAAGPQVVDELDEAHDNGGLPEPPGSSVDEEDNDYEPRGDEESDDENKVEIASRKKR ASKKSKEPVTENEKPVRKRNRSNDTSEQSMQKPRKKFSHSTRRNKRCVNKDLLNMPEDEIDFKRLPIRDIILFAEYKERLATTTSKIPPNNQSTDNPFHG EYSHNEEDGFASEQDITHGDDQTYVRAQPSSSLFNYQSFMDRAPNSRWSKQDTELFYEGIQQFGTDLSMIQQLFPGRTRHQVKLKYKKEERQHPLRLHEA LSSRPKDNSYFEKLIEQLQEVAGTQEEQESYKDDLVDVSGEEDAELNAETSGEVTKPEQGENAGVEEEQEKNVAEDHHGPLKSGVSDEDVDDIWGSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	0	1
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	3.46	0.9111
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	4.47	0.9005
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	5.00	0.8977
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.016G132000 [exp]	5.56	0.8513
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	6.32	0.8848
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	6.92	0.8581
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	7.34	0.8942
					Potri.009G040500 [exp]	7.48	0.8909
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	8.77	0.8827
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	8.94	0.8714

Compare expression of checked genes

Potri.010G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.