Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36980 724 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 395 / 4e-128 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 380 / 6e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 360 / 2e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G21090 336 / 2e-107 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G12770 332 / 6e-105 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 333 / 1e-104 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 332 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35030 327 / 2e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 330 / 4e-102 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027800 [exp] 410 / 8e-134 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 383 / 2e-123 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G104700 [exp] 362 / 4e-116 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 363 / 8e-116 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G038400 [exp] 355 / 4e-114 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 349 / 3e-110 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 341 / 1e-107 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G021100 [exp] 338 / 2e-107 AT3G05340 860 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 335 / 4e-105 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033982 [exp] 654 / 0 AT2G36980 554 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012796 [exp] 635 / 0 AT2G36980 516 / 1e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 382 / 8e-123 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 360 / 8e-116 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028106 [exp] 362 / 3e-115 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 345 / 9e-109 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 342 / 9e-108 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 330 / 2e-103 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 329 / 2e-103 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 330 / 5e-103 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G020500.1 pacid=42798829 polypeptide=Potri.010G020500.1.p locus=Potri.010G020500 ID=Potri.010G020500.1.v4.1 annot-version=v4.1 ATGCATTCTATCCTATTCCAAATCACCTCCAAAATCACTTCCCTTGCAAGATCAGGTTACATTACACATGCCCGTAAACTGTTCGATGAAATGAAAAAGA GAGATGCAGTTGCTTGGAATTCAATGCTTACTGGTTATTCTCATCTGGGTCTTCACCAAGAAGCCTTGTCTCTCTTCCGCCAAATGAGAACCAGCAACAC CAAGCCTGATCACTTCACATTCACTACAACTTTAAATGCATGTGGGGCTTCAAGTTCGCTTCGAAATGGAACCAAAATTCACGCTTTAGTTATTGTTTTG GGATGTCAATCTTCGATTCCGGTTAATAACTCGCTTATTGACATGTATGGGAAGTGTTTGTGTCCGTTTAGTGCCAATAAAGTTTTTCAAGAAATGATCG ATTCCAATGAAGTTTCCTGGGGTTCTCTTTTGTTTGCGTATACGAATTCTGGTCAGTTTGACGCAGCCGCTTCCGTTTTTAAATCCATGCCTAAAAAGGT TGATGTTGCTTGGAATATAATGATTTCTGGTCTTGGTCAGTATGGTGAAATTGAGTTATGTTTGGAAATGTTCAAAGAGATGAGGGAGAGTTTCTGTGAG CCTGACCAATGGACTTATAGTGCCCTCATAAGTGCTTGCACCGAGTCATTAGAATTGGTATATGGATGTATGATGCATGCTGTTGTTATTAAGGCTGGTT GGAGCTCAGCAATGGAGGCAAATAATTCAATTCTAAGCTTTTATGCTAAACTTGGTTCCTTGAATGATGCTGTGAAGGTGTTTGAATCCATGGGAACTCT GACACAGGTGTCTTGGAATGCCATTATTGATGTTTTTATGAAAGCAGGAGATACCAGTGAAGCATTTCTCTCATTTCAGCGCATGCCTGATAAGAATGTT GTTTCGTGGACATCTATGATTACAGGGTATGCAAGAAACGGGTATGGAGAAGAAGCACTTGACTTTTTTGTTGGAATGATAAGGAATTGCTTGCTTCCTG ATGATTTTACATTTGGAGCTGTCCTTCATGCATGCTCAAGTTTGGCAATACTTGGGCATGGGAGAATGGTCCATGGATGTGTAATTCGCCATGGTTTTCA TGCCCATGTGTATATTGGCAATGGTTTAGTTAACATGTATGCTAAGTGTGGAGATTTAGAAGGGTCAAATCTAGCATTCAATGATATTTACGAGAAGGAT CTGGTCTCTTTCAATTCCATGTTGTTTGCATTTGGATTGCATGGAAAGGGTACTCAAGCTCTACAGCTGTATGAAGATATGGTAGCATCTGGGATAAAAC CAGATAAAGTGACTTTCATTGGCTTGTTTCTGACTTGTAGCCACTCAGGGCTAATAGATAAAGGTCTCGAGTTTTTTGAATCAATGAGGTTAGTTCACGG GCTATCCTTCAACATGGATCATGTGGCATGCATGGTGGATATGCTTGGCCGAGGTGGCTACTTAGCAGAAGCAAAAGAGTTGGCTATCAAGCATTCAAAA ACAGGTGATGTTAAGACCAGCTCTTGTGAACCTCTGCTGGGAGCATGTTCTACACATGGTGAAGTTGAAACTGGGACTAATGTGGGGGAAACGTTAAAGG ATTTAGAACCTCATAAAGAGACAAGCTATTATGTGTTGCGGTCGAATTTGTATTGCGCTAGCGGGCGATGGAAGGAAGCAGAGATGGTTAGAAAGGAAAT GGTAGATGAAGGGTTGAAGAAAATTCCTGGTTGTAGTTGGATTGAAGTGGGAAACAAGGTAACAGCATTTGTAGCAGGACAGTCACAACCATGTATGGAA GAGTTGTACACAACATTACATTTCCTGGAATTAGAAATGAGACATCCATGCTTCATTGATTGTGAAAATTGA
AA sequence Show only first row Show all	>Potri.010G020500.1 pacid=42798829 polypeptide=Potri.010G020500.1.p locus=Potri.010G020500 ID=Potri.010G020500.1.v4.1 annot-version=v4.1 MHSILFQITSKITSLARSGYITHARKLFDEMKKRDAVAWNSMLTGYSHLGLHQEALSLFRQMRTSNTKPDHFTFTTTLNACGASSSLRNGTKIHALVIVL GCQSSIPVNNSLIDMYGKCLCPFSANKVFQEMIDSNEVSWGSLLFAYTNSGQFDAAASVFKSMPKKVDVAWNIMISGLGQYGEIELCLEMFKEMRESFCE PDQWTYSALISACTESLELVYGCMMHAVVIKAGWSSAMEANNSILSFYAKLGSLNDAVKVFESMGTLTQVSWNAIIDVFMKAGDTSEAFLSFQRMPDKNV VSWTSMITGYARNGYGEEALDFFVGMIRNCLLPDDFTFGAVLHACSSLAILGHGRMVHGCVIRHGFHAHVYIGNGLVNMYAKCGDLEGSNLAFNDIYEKD LVSFNSMLFAFGLHGKGTQALQLYEDMVASGIKPDKVTFIGLFLTCSHSGLIDKGLEFFESMRLVHGLSFNMDHVACMVDMLGRGGYLAEAKELAIKHSK TGDVKTSSCEPLLGACSTHGEVETGTNVGETLKDLEPHKETSYYVLRSNLYCASGRWKEAEMVRKEMVDEGLKKIPGCSWIEVGNKVTAFVAGQSQPCME ELYTTLHFLELEMRHPCFIDCEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36980			Tetratricopeptide repeat (TPR)...		Potri.010G020500 [exp]	0	1
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	2.44	0.8797
AT5G15010			Tetratricopeptide repeat (TPR)...		Potri.013G053600 [exp]	8.36	0.8584
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	8.94	0.8831
AT1G43980			Tetratricopeptide repeat (TPR)...		Potri.005G185300 [exp]	10.09	0.8075
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	11.83	0.8773
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	15.16	0.8677
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	18.70	0.8384
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	19.39	0.8583
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	19.89	0.8674
AT1G09220			Pentatricopeptide repeat (PPR)...		Potri.013G054400 [exp]	20.44	0.8287

Compare expression of checked genes

Potri.010G020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.